Information for motif22


Reverse Opposite:

p-value:1e-26
log p-value:-6.036e+01
Information Content per bp:1.873
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets95.1 +/- 54.9bp
Average Position of motif in Background76.4 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CGGGCTAAATGG--
----GTTAATGGCC

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGGGCTAAATGG--
TGTAGGGATTAATTGTC

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGGGCTAAATGG--
TGAAGGGATTAATCATC

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CGGGCTAAATGG--
--TGATTRATGGCY

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CGGGCTAAATGG
--TGATTGATGA

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGGGCTAAATGG-----
NTNNTTAAGTGGNTNAN

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGGGCTAAATGG--
AGAGGGGATTAATTTAT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGGGCTAAATGG
NGGGATTA----

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGGGCTAAATGG-
CTCCAGGGGTCAATTGA

MA0163.1_PLAG1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGGGCTAAATGG--
GGGGCCCAAGGGGG