Information for motif24


Reverse Opposite:

p-value:1e-25
log p-value:-5.917e+01
Information Content per bp:1.660
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets102.0 +/- 51.3bp
Average Position of motif in Background102.2 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGTTAG----
GGAGGTCATTAATTAT

PH0067.1_Hoxc12/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGTTAG-----
TTAGGTCGTAAAATTTC

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGTCGTTAG--
AGGTCTCTAACC

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGTTAG----
TAAAGTCGTAAAACAT

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGTTAG-----
TAAGGTCGTAAAATCCT

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGTTAG----
TAAAGTCGTAAAATAG

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGGTCGTTAG
-GGCVGTTR-

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGTTAG----
TAAAGTCGTAAAACGT

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGGTCGTTAG-
TATTCAAGGTCATGCGA

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGTCGTTAG-----
CAAGGTCGTAAAATCTT