Information for motif28


Reverse Opposite:

p-value:1e-21
log p-value:-5.039e+01
Information Content per bp:1.662
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets101.6 +/- 58.5bp
Average Position of motif in Background126.4 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CATTATAAGG---
NANTATTATAATTNNN

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CATTATAAGG
GNCTATAAAAGG

PB0174.1_Sox30_2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CATTATAAGG---
TAAGATTATAATACGG

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CATTATAAGG
TNCCATATATGG

PH0152.1_Pou6f1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CATTATAAGG----
AAACATAATGAGGTTGC

MA0109.1_Hltf/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CATTATAAGG--
--NNATAAGGNN

PB0069.1_Sox21_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CATTATAAGG---
TTTAATTATAATTAAG

MA0083.2_SRF/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CATTATAAGG---
CATGCCCAAATAAGGCAA

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CATTATAAGG
YCATTAMC---

PB0078.1_Srf_1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATTATAAGG--
TTCCATATATGGAA