Information for motif32


Reverse Opposite:

p-value:1e-21
log p-value:-4.872e+01
Information Content per bp:1.455
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets104.5 +/- 53.7bp
Average Position of motif in Background123.2 +/- 53.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGTCGGGCAG
-TNNGGGCAG

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTCGGGCAG--
TGTCTGDCACCT

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGTCGGGCAG-
NTGATTGACAGN

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTCGGGCAG--
CTGTCTGTCACCT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGTCGGGCAG--
TGAGTGACAGSC

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGTCGGGCAG----
NNNNTTGGGCACNNCN

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCGGGCAG--
NNTNNTGTCTGGNNTNG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTCGGGCAG
CTGTCTGG---

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGTCGGGCAG
GGTCTGGCAT

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TGTCGGGCAG-
-----NGAAGC