Information for motif33


Reverse Opposite:

p-value:1e-19
log p-value:-4.583e+01
Information Content per bp:1.927
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets101.1 +/- 47.7bp
Average Position of motif in Background80.6 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCAACCGCTT
ACAACAC---

BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCAACCGCTT
NHAACBGYYV

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCAACCGCTT
-YAACBGCC-

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCAACCGCTT
CCAACTGCCA

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCAACCGCTT
--AACAGCTG

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCAACCGCTT
--AACCGANA

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAACCGCTT-
-BAACAGCTGT

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAACCGCTT--
NNAGCAGCTGCT

MA0510.1_RFX5/Jaspar

Match Rank:9
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------GCAACCGCTT
CTCCCTGGCAACAGC--

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCAACCGCTT
SCCTAGCAACAG---