Information for motif34


Reverse Opposite:

p-value:1e-18
log p-value:-4.223e+01
Information Content per bp:1.530
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets108.3 +/- 54.6bp
Average Position of motif in Background112.6 +/- 41.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0074.1_RXRA::VDR/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCGCATAGAGTT--
GGGTCAACGAGTTCA

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCGCATAGAGTT
GCCGCGCAGTGCGT-

VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCGCATAGAGTT-----
NGAGGTCANNGAGTTCANNN

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCGCATAGAGTT
--GCAGTGATTT

MA0483.1_Gfi1b/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GCGCATAGAGTT
-TGCTGTGATTT

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GCGCATAGAGTT-
AAAGCTCGTAAAATTT

MA0007.2_AR/Jaspar

Match Rank:7
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GCGCATAGAGTT-
AAGAACAGAATGTTC

MA0113.2_NR3C1/Jaspar

Match Rank:8
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-GCGCATAGAGTT--
AGAACAGAATGTTCT

PB0128.1_Gcm1_2/Jaspar

Match Rank:9
Score:0.46
Offset:-1
Orientation:forward strand
Alignment:-GCGCATAGAGTT----
TGCGCATAGGGGAGGAG

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:GCGCATAGAGTT---
GRACAGWMTGTYCTB