Information for motif40


Reverse Opposite:

p-value:1e-15
log p-value:-3.485e+01
Information Content per bp:1.768
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets103.3 +/- 59.5bp
Average Position of motif in Background112.7 +/- 51.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0194.1_Zbtb12_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CGTTCAAA-----
AGNGTTCTAATGANN

CHR/Cell-Cycle-Exp/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGTTCAAA
CGGTTTCAAA

PB0082.1_Tcf3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGTTCAAA------
TATAGATCAAAGGAAAA

PB0040.1_Lef1_1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CGTTCAAA------
NANAGATCAAAGGGNNN

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGTTCAAA------
TATAGATCAAAGGAAAA

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGTTCAAA--
ACATCAAAGG

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGTTCAAA------
NNNAGATCAAAGGANNN

MA0523.1_TCF7L2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGTTCAAA----
AAAGATCAAAGGAA

MA0484.1_HNF4G/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGTTCAAA-----
AGAGTCCAAAGTCCA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGTTCAAA----
ACATCAAAGGNA