Information for motif42


Reverse Opposite:

p-value:1e-14
log p-value:-3.225e+01
Information Content per bp:1.951
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif2.21%
Number of Background Sequences with motif21.4
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets101.6 +/- 58.0bp
Average Position of motif in Background85.8 +/- 48.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TCAGTCCC--
----TCCCCA

POL002.1_INR/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCAGTCCC
TCAGTCTT

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCAGTCCC-----
NTTGTTAATCCCTCTNN

PH0124.1_Obox5_1/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TCAGTCCC----
NANANTTAATCCCNNNN

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TCAGTCCC----
GANNATTAATCCCTNNN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCAGTCCC-
TTAAGTGCTT

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCAGTCCC-----
NTAGTTAATCCCCTTAN

MA0477.1_FOSL1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCAGTCCC-
NATGAGTCACC

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TCAGTCCC----
GNNNATTAATCCCTNCN

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TCAGTCCC-----
ATAGTTAATCCCCCNNA