Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3174)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2798)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-124	-2.862e+02	0.0000	691.0	21.77%	227.5	8.13%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-113	-2.604e+02	0.0000	580.0	18.27%	180.0	6.43%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-97	-2.245e+02	0.0000	534.0	16.82%	171.9	6.14%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-61	-1.409e+02	0.0000	272.0	8.57%	74.8	2.67%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-51	-1.176e+02	0.0000	581.0	18.30%	267.0	9.54%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-45	-1.053e+02	0.0000	946.0	29.80%	538.4	19.24%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-43	-1.010e+02	0.0000	162.0	5.10%	38.6	1.38%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-42	-9.874e+01	0.0000	187.0	5.89%	50.5	1.81%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-35	-8.197e+01	0.0000	1353.0	42.63%	895.2	31.98%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-31	-7.140e+01	0.0000	425.0	13.39%	207.5	7.41%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-27	-6.290e+01	0.0000	305.0	9.61%	137.9	4.93%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-24	-5.676e+01	0.0000	428.0	13.48%	225.2	8.05%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-24	-5.612e+01	0.0000	447.0	14.08%	239.6	8.56%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-23	-5.515e+01	0.0000	621.0	19.57%	366.3	13.09%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-23	-5.463e+01	0.0000	273.0	8.60%	124.1	4.43%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-21	-4.918e+01	0.0000	475.0	14.97%	268.9	9.61%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-20	-4.669e+01	0.0000	927.0	29.21%	618.5	22.10%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-17	-4.047e+01	0.0000	1416.0	44.61%	1038.7	37.11%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-17	-3.934e+01	0.0000	566.0	17.83%	352.0	12.58%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-15	-3.545e+01	0.0000	878.0	27.66%	604.6	21.60%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-15	-3.505e+01	0.0000	772.0	24.32%	520.2	18.59%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-13	-3.163e+01	0.0000	1427.0	44.96%	1073.5	38.35%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-13	-3.116e+01	0.0000	709.0	22.34%	479.0	17.11%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-10	-2.401e+01	0.0000	131.0	4.13%	62.5	2.23%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-10	-2.395e+01	0.0000	1050.0	33.08%	778.0	27.80%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-9	-2.248e+01	0.0000	566.0	17.83%	387.3	13.84%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-8	-2.054e+01	0.0000	91.0	2.87%	40.7	1.46%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-8	-1.925e+01	0.0000	605.0	19.06%	427.6	15.28%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-8	-1.851e+01	0.0000	153.0	4.82%	83.1	2.97%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-7	-1.790e+01	0.0000	109.0	3.43%	54.7	1.95%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-7	-1.731e+01	0.0000	599.0	18.87%	428.6	15.31%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-7	-1.719e+01	0.0000	60.0	1.89%	24.6	0.88%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-7	-1.719e+01	0.0000	404.0	12.73%	273.9	9.79%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-7	-1.682e+01	0.0000	1674.0	52.74%	1343.3	47.99%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-6	-1.587e+01	0.0000	95.0	2.99%	47.2	1.69%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-6	-1.572e+01	0.0000	22.0	0.69%	5.2	0.18%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-6	-1.563e+01	0.0000	650.0	20.48%	475.0	16.97%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-6	-1.558e+01	0.0000	323.0	10.18%	214.7	7.67%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.492e+01	0.0000	19.0	0.60%	4.4	0.16%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-6	-1.473e+01	0.0000	180.0	5.67%	108.8	3.89%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-6	-1.401e+01	0.0000	13.0	0.41%	2.7	0.10%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-5	-1.367e+01	0.0000	472.0	14.87%	337.4	12.06%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-5	-1.314e+01	0.0000	486.0	15.31%	350.2	12.51%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-5	-1.230e+01	0.0000	734.0	23.13%	557.8	19.93%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-4	-1.147e+01	0.0001	613.0	19.31%	461.0	16.47%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-1.123e+01	0.0001	283.0	8.92%	194.9	6.96%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-4	-1.023e+01	0.0002	402.0	12.67%	292.8	10.46%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-4	-1.015e+01	0.0002	121.0	3.81%	73.5	2.63%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-1.001e+01	0.0002	165.0	5.20%	106.3	3.80%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-4	-9.918e+00	0.0002	47.0	1.48%	22.7	0.81%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-4	-9.588e+00	0.0003	698.0	21.99%	539.1	19.26%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-4	-9.440e+00	0.0004	759.0	23.91%	591.8	21.14%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-4	-9.324e+00	0.0004	17.0	0.54%	5.8	0.21%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-8.920e+00	0.0006	75.0	2.36%	42.7	1.52%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-8.731e+00	0.0007	362.0	11.41%	265.7	9.49%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.689e+00	0.0007	663.0	20.89%	514.5	18.38%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-8.662e+00	0.0007	374.0	11.78%	275.4	9.84%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-3	-8.398e+00	0.0010	20.0	0.63%	7.5	0.27%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-8.158e+00	0.0012	62.0	1.95%	34.8	1.24%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-3	-8.095e+00	0.0013	38.0	1.20%	18.8	0.67%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-3	-7.728e+00	0.0018	124.0	3.91%	80.7	2.88%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.661e+00	0.0019	505.0	15.91%	387.5	13.84%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-7.657e+00	0.0019	150.0	4.73%	100.5	3.59%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.438e+00	0.0023	87.0	2.74%	53.8	1.92%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-7.408e+00	0.0023	40.0	1.26%	20.8	0.74%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-3	-7.408e+00	0.0023	252.0	7.94%	181.2	6.48%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-7.230e+00	0.0027	235.0	7.40%	168.8	6.03%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-6.957e+00	0.0034	362.0	11.41%	272.6	9.74%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.790e+00	0.0040	174.0	5.48%	121.2	4.33%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-6.788e+00	0.0040	6.0	0.19%	1.8	0.06%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-6.584e+00	0.0048	236.0	7.44%	171.7	6.13%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-6.554e+00	0.0049	31.0	0.98%	15.9	0.57%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-6.510e+00	0.0050	94.0	2.96%	60.3	2.16%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-6.414e+00	0.0054	57.0	1.80%	33.5	1.20%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-6.346e+00	0.0058	490.0	15.44%	381.5	13.63%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-6.315e+00	0.0059	176.0	5.55%	124.5	4.45%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-6.293e+00	0.0059	186.0	5.86%	132.6	4.74%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-6.214e+00	0.0063	35.0	1.10%	18.8	0.67%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-6.091e+00	0.0070	45.0	1.42%	25.7	0.92%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-5.916e+00	0.0083	75.0	2.36%	47.8	1.71%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.902e+00	0.0083	144.0	4.54%	100.7	3.60%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-5.877e+00	0.0084	126.0	3.97%	86.9	3.10%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-5.749e+00	0.0094	436.0	13.74%	339.3	12.12%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.667e+00	0.0100	73.0	2.30%	47.0	1.68%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-5.667e+00	0.0100	73.0	2.30%	46.0	1.64%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-5.453e+00	0.0122	185.0	5.83%	134.0	4.79%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-5.406e+00	0.0126	260.0	8.19%	195.4	6.98%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-5.406e+00	0.0126	260.0	8.19%	195.8	7.00%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-5.339e+00	0.0133	32.0	1.01%	17.0	0.61%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.318e+00	0.0134	1032.0	32.51%	850.9	30.40%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-5.313e+00	0.0134	26.0	0.82%	13.5	0.48%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-5.213e+00	0.0146	248.0	7.81%	186.5	6.66%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-5.168e+00	0.0151	394.0	12.41%	307.4	10.98%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-5.147e+00	0.0152	50.0	1.58%	30.6	1.09%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-5.106e+00	0.0157	307.0	9.67%	235.1	8.40%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.099e+00	0.0157	151.0	4.76%	108.1	3.86%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-5.037e+00	0.0165	368.0	11.59%	286.6	10.24%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.001e+00	0.0169	418.0	13.17%	328.9	11.75%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-4.958e+00	0.0175	11.0	0.35%	4.5	0.16%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-4.931e+00	0.0178	67.0	2.11%	43.3	1.55%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-4.741e+00	0.0213	38.0	1.20%	22.3	0.80%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.642e+00	0.0232	521.0	16.41%	417.9	14.93%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-4.334e+00	0.0313	144.0	4.54%	105.5	3.77%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-4.264e+00	0.0333	69.0	2.17%	46.4	1.66%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-4.014e+00	0.0423	90.0	2.84%	63.5	2.27%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.982e+00	0.0433	922.0	29.05%	766.4	27.38%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.978e+00	0.0433	28.0	0.88%	16.2	0.58%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.946e+00	0.0440	68.0	2.14%	46.2	1.65%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.812e+00	0.0499	13.0	0.41%	6.9	0.25%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-3.589e+00	0.0618	586.0	18.46%	480.4	17.16%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-3.493e+00	0.0674	488.0	15.37%	397.6	14.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.463e+00	0.0688	510.0	16.07%	416.3	14.87%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.417e+00	0.0714	314.0	9.89%	250.4	8.95%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.385e+00	0.0731	199.0	6.27%	154.5	5.52%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.198e+00	0.0874	18.0	0.57%	10.8	0.38%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.169e+00	0.0892	109.0	3.43%	81.9	2.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.122e+00	0.0927	730.0	23.00%	608.9	21.75%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.119e+00	0.0927	74.0	2.33%	53.7	1.92%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.094e+00	0.0937	208.0	6.55%	163.2	5.83%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.044e+00	0.0976	228.0	7.18%	180.4	6.45%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-2.895e+00	0.1124	246.0	7.75%	196.7	7.03%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.892e+00	0.1124	104.0	3.28%	78.1	2.79%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.881e+00	0.1124	16.0	0.50%	9.4	0.34%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.847e+00	0.1151	116.0	3.65%	89.0	3.18%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.778e+00	0.1224	32.0	1.01%	21.1	0.75%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.659e+00	0.1367	180.0	5.67%	142.4	5.09%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.656e+00	0.1367	174.0	5.48%	137.6	4.92%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.653e+00	0.1367	168.0	5.29%	132.0	4.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.459e+00	0.1630	401.0	12.63%	332.0	11.86%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.424e+00	0.1675	510.0	16.07%	425.7	15.21%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.416e+00	0.1676	50.0	1.58%	36.8	1.31%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.401e+00	0.1689	152.0	4.79%	120.5	4.30%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.348e+00	0.1767	83.0	2.61%	64.0	2.29%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-2.334e+00	0.1779	112.0	3.53%	87.2	3.11%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.279e+00	0.1866	79.0	2.49%	60.7	2.17%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.202e+00	0.2001	128.0	4.03%	101.5	3.63%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.123e+00	0.2150	175.0	5.51%	141.4	5.05%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.055e+00	0.2283	583.0	18.37%	493.0	17.61%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.007e+00	0.2378	36.0	1.13%	26.9	0.96%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.990e+00	0.2403	382.0	12.04%	319.8	11.43%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.975e+00	0.2422	22.0	0.69%	15.9	0.57%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.926e+00	0.2524	82.0	2.58%	64.8	2.31%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.913e+00	0.2541	191.0	6.02%	156.7	5.60%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.906e+00	0.2541	454.0	14.30%	382.1	13.65%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.902e+00	0.2541	260.0	8.19%	215.8	7.71%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.835e+00	0.2689	243.0	7.66%	201.3	7.19%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.817e+00	0.2720	39.0	1.23%	29.8	1.07%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.711e+00	0.3003	64.0	2.02%	50.9	1.82%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.676e+00	0.3089	96.0	3.02%	77.6	2.77%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.619e+00	0.3249	131.0	4.13%	107.9	3.86%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.609e+00	0.3260	541.0	17.04%	461.8	16.50%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.555e+00	0.3417	17.0	0.54%	12.9	0.46%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e0	-1.551e+00	0.3417	8.0	0.25%	5.5	0.20%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.527e+00	0.3468	39.0	1.23%	30.3	1.08%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.514e+00	0.3493	242.0	7.62%	203.6	7.27%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.424e+00	0.3797	24.0	0.76%	18.8	0.67%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.288e+00	0.4323	358.0	11.28%	306.3	10.94%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.248e+00	0.4470	66.0	2.08%	54.3	1.94%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.238e+00	0.4486	53.0	1.67%	43.3	1.55%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.219e+00	0.4545	74.0	2.33%	61.7	2.20%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.217e+00	0.4545	28.0	0.88%	22.2	0.79%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.202e+00	0.4567	139.0	4.38%	117.4	4.20%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.156e+00	0.4750	286.0	9.01%	245.2	8.76%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.134e+00	0.4824	30.0	0.95%	24.7	0.88%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.088e+00	0.5023	547.0	17.23%	474.2	16.94%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.080e+00	0.5030	45.0	1.42%	37.2	1.33%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.074e+00	0.5032	88.0	2.77%	74.6	2.66%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.043e+00	0.5159	112.0	3.53%	95.6	3.42%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.043e+00	0.5159	667.0	21.01%	580.9	20.75%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.023e+00	0.5204	159.0	5.01%	136.6	4.88%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-9.833e-01	0.5381	304.0	9.58%	263.9	9.43%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-9.827e-01	0.5381	170.0	5.36%	146.7	5.24%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.688e-01	0.5397	28.0	0.88%	23.4	0.84%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-9.608e-01	0.5409	87.0	2.74%	74.1	2.65%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.543e-01	0.5413	95.0	2.99%	81.6	2.91%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.317e-01	0.5505	66.0	2.08%	56.9	2.03%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.132e-01	0.5576	67.0	2.11%	57.2	2.04%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-9.037e-01	0.5598	257.0	8.10%	223.9	8.00%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.800e-01	0.5700	31.0	0.98%	26.6	0.95%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.790e-01	0.5700	46.0	1.45%	39.1	1.40%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.399e-01	0.5868	95.0	2.99%	82.8	2.96%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.156e-01	0.5979	4.0	0.13%	3.4	0.12%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.134e-01	0.5979	105.0	3.31%	91.8	3.28%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.965e-01	0.6028	196.0	6.18%	171.7	6.13%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.931e-01	0.6028	221.0	6.96%	193.4	6.91%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.919e-01	0.6028	436.0	13.74%	382.2	13.66%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.713e-01	0.6051	84.0	2.65%	73.5	2.62%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-7.713e-01	0.6051	84.0	2.65%	73.0	2.61%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.649e-01	0.6057	20.0	0.63%	17.9	0.64%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-7.127e-01	0.6349	22.0	0.69%	19.1	0.68%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.075e-01	0.6349	131.0	4.13%	115.8	4.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-7.057e-01	0.6349	106.0	3.34%	93.5	3.34%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.983e-01	0.6349	31.0	0.98%	27.7	0.99%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.566e-01	0.6576	145.0	4.57%	128.7	4.60%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.968e-01	0.6946	73.0	2.30%	65.9	2.35%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.872e-01	0.6977	136.0	4.28%	121.7	4.35%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.675e-01	0.7079	20.0	0.63%	18.2	0.65%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.520e-01	0.7154	59.0	1.86%	53.3	1.90%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.435e-01	0.7179	11.0	0.35%	10.0	0.36%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.261e-01	0.7268	52.0	1.64%	47.4	1.69%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.901e-01	0.7497	14.0	0.44%	13.1	0.47%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.527e-01	0.7745	137.0	4.32%	124.9	4.46%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-4.250e-01	0.7923	19.0	0.60%	18.1	0.64%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.143e-01	0.7930	20.0	0.63%	19.7	0.70%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.143e-01	0.7930	20.0	0.63%	19.7	0.70%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.092e-01	0.7931	4.0	0.13%	4.8	0.17%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.068e-01	0.7931	145.0	4.57%	132.2	4.72%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.065e-01	0.7931	202.0	6.36%	184.0	6.57%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.880e-01	0.7986	1.0	0.03%	1.5	0.05%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.651e-01	0.8131	296.0	9.33%	268.1	9.58%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.548e-01	0.8176	11.0	0.35%	11.8	0.42%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.952e-01	0.8638	36.0	1.13%	35.2	1.26%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	-2.864e-01	0.8673	22.0	0.69%	22.7	0.81%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.707e-01	0.8769	67.0	2.11%	65.0	2.32%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.468e-01	0.8940	60.0	1.89%	58.5	2.09%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.269e-01	0.9077	126.0	3.97%	119.4	4.27%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.137e-01	0.9155	153.0	4.82%	144.1	5.15%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.011e-01	0.9228	135.0	4.25%	128.9	4.61%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.582e-01	0.9545	2.0	0.06%	3.8	0.14%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.582e-01	0.9545	2.0	0.06%	3.4	0.12%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.401e-01	0.9676	11.0	0.35%	13.4	0.48%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.309e-01	0.9721	204.0	6.43%	194.1	6.93%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.278e-01	0.9721	206.0	6.49%	196.1	7.01%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.260e-01	0.9721	307.0	9.67%	288.8	10.32%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.151e-01	0.9744	141.0	4.44%	137.9	4.93%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.102e-01	0.9749	70.0	2.21%	71.9	2.57%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-9.760e-02	0.9829	28.0	0.88%	31.9	1.14%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.673e-02	0.9829	4.0	0.13%	6.8	0.24%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-6.286e-02	1.0000	78.0	2.46%	81.4	2.91%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.128e-02	1.0000	116.0	3.65%	118.3	4.22%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.952e-02	1.0000	8.0	0.25%	12.3	0.44%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.931e-02	1.0000	121.0	3.81%	124.6	4.45%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.474e-02	1.0000	3.0	0.09%	6.7	0.24%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.569e-02	1.0000	5.0	0.16%	9.2	0.33%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.912e-02	1.0000	127.0	4.00%	133.7	4.78%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.839e-02	1.0000	131.0	4.13%	137.9	4.93%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.798e-02	1.0000	50.0	1.58%	58.9	2.10%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.075e-03	1.0000	363.0	11.44%	359.3	12.84%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.081e-03	1.0000	216.0	6.81%	228.3	8.16%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.490e-04	1.0000	34.0	1.07%	51.2	1.83%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.040e-04	1.0000	44.0	1.39%	64.1	2.29%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.000e-05	1.0000	29.0	0.91%	49.1	1.75%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.900e-05	1.0000	1243.0	39.16%	1197.0	42.77%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	100.0	3.15%	137.6	4.92%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-0.000e+00	1.0000	14.0	0.44%	39.6	1.41%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.07%