Information for motif12


Reverse Opposite:

p-value:1e-11
log p-value:-2.550e+01
Information Content per bp:1.646
Number of Target Sequences with motif147.0
Percentage of Target Sequences with motif4.63%
Number of Background Sequences with motif1178.9
Percentage of Background Sequences with motif2.53%
Average Position of motif in Targets96.5 +/- 53.1bp
Average Position of motif in Background102.3 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0158.1_HOXA5/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CATTAGAGGG
AATTAGTG--

MA0132.1_Pdx1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CATTAGAGGG
AATTAG----

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CATTAGAGGG------
TGGCCACCAGGTGGCACTNT

MA0139.1_CTCF/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CATTAGAGGG-----
TGGCCACCAGGGGGCGCTA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CATTAGAGGG--------
GCCASCAGGGGGCGCYVNNG

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CATTAGAGGG
BCMATTAG----

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CATTAGAGGG----
ATTTTNGGGGGGCNN

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CATTAGAGGG
YCATTAMC---

PB0194.1_Zbtb12_2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CATTAGAGGG--
TATCATTAGAACGCT

PH0109.1_Nkx1-1/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CATTAGAGGG-
TGCGCTAATTAGTGGGA