Information for motif18


Reverse Opposite:

p-value:1e-7
log p-value:-1.812e+01
Information Content per bp:1.882
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.8 +/- 57.8bp
Average Position of motif in Background93.6 +/- 49.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0046.1_HNF1A/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAAACATTTAC-
GNTAATNATTAACC

MA0031.1_FOXD1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCAAACATTTAC
GTAAACAT----

PH0005.1_Barhl1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAAACATTTAC---
AACAACCAATTAATTC

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAAACATTTAC--
NNNTAACAATTATAN

PH0006.1_Barhl2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAAACATTTAC---
AAAAACCAATTAAGAA

MA0148.3_FOXA1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCAAACATTTAC
CAAAGTAAACANNNN-

MA0157.1_FOXO3/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAAACATTTAC
TGTAAACA-----

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAAACATTTAC-------
--NNNATTTTACGACNNTN

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAAACATTTAC
-TAATCAATTA-

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCAAACATTTAC
AAAGTAAACA-----