Information for motif2


Reverse Opposite:

p-value:1e-51
log p-value:-1.176e+02
Information Content per bp:1.592
Number of Target Sequences with motif926.0
Percentage of Target Sequences with motif29.17%
Number of Background Sequences with motif8447.0
Percentage of Background Sequences with motif18.16%
Average Position of motif in Targets100.7 +/- 52.5bp
Average Position of motif in Background100.8 +/- 59.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGSTG--
CCCCCTGCTGTG

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.81
Offset:-8
Orientation:forward strand
Alignment:--------CCCCCTGSTG--
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----CCCCCTGSTG----
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------CCCCCTGSTG----
ANAGTGCCACCTGGTGGCCA

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGSTG--
TCCCCTGGGGAC

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGSTG---
CCCCCCCGGGGGGGT

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGSTG-----
TCNCCTGCTGNGNNN

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGSTG---
CCCCCCCGGGGGGGT

MA0154.2_EBF1/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CCCCCTGSTG--
-TCCCTGGGGAN

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCCCCTGSTG
NNCACCTGNN-