Information for motif21


Reverse Opposite:

p-value:1e-7
log p-value:-1.638e+01
Information Content per bp:1.895
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif18.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets82.2 +/- 50.5bp
Average Position of motif in Background116.1 +/- 54.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TTAATCAGGTTA-
-TAATCHGATTAC

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TTAATCAGGTTA
YTAATYNRATTA

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTAATCAGGTTA-
CNATAATCCGNTTNT

PH0151.1_Pou6f1_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TTAATCAGGTTA-
GACGATAATGAGCTTGC

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----TTAATCAGGTTA-
NNNATTAATCCGNTTNA

PH0096.1_Lhx6_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TTAATCAGGTTA
GAGCGTTAATTAATGTA

PH0092.1_Lhx2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCAGGTTA
NNNNNCTAATTAGTTTA

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TTAATCAGGTTA-
AAACATAATGAGGTTGC

PB0185.1_Tcf1_2/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTAATCAGGTTA-
NNTAATCCNGNCNN

PH0058.1_Hoxb3/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TTAATCAGGTTA
TNNNACTAATTAGNTCA