Information for motif23


Reverse Opposite:

p-value:1e-6
log p-value:-1.491e+01
Information Content per bp:1.949
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif36.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets99.9 +/- 55.4bp
Average Position of motif in Background100.1 +/- 46.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0144.1_Pou2f2/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CATTTGAATA---
TNTAATTTGCATANNN

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CATTTGAATA---
TNTAATTTGCATACNA

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CATTTGAATA-
-ATTTGCATAT

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CATTTGAATA-
-ATTTGCATAA

MA0507.1_POU2F2/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CATTTGAATA-
TTCATTTGCATAT

CHR/Cell-Cycle-Exp/Homer

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CATTTGAATA--
--TTTGAAACCG

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATTTGAATA---
AATCAATTCAATAATT

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CATTTGAATA------
-ATTTGCATAACAATG

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATTTGAATA-----
NTTNTATGAATGTGNNC

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CATTTGAATA---
TATAATTATAATATTC