| p-value: | 1e-6 |
| log p-value: | -1.391e+01 |
| Information Content per bp: | 1.530 |
| Number of Target Sequences with motif | 28.0 |
| Percentage of Target Sequences with motif | 0.88% |
| Number of Background Sequences with motif | 140.2 |
| Percentage of Background Sequences with motif | 0.30% |
| Average Position of motif in Targets | 104.1 +/- 52.7bp |
| Average Position of motif in Background | 94.5 +/- 59.8bp |
| Strand Bias (log2 ratio + to - strand density) | 0.1 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
PB0068.1_Sox1_1/Jaspar
| Match Rank: | 1 |
| Score: | 0.78
| | Offset: | -6
| | Orientation: | reverse strand |
| Alignment: | ------TGAATTGC--
NNNTATTGAATTGNNN |
|
|
|
PH0041.1_Hmx1/Jaspar
| Match Rank: | 2 |
| Score: | 0.76
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TGAATTGC----
ANNCATTAATTGCTNGN |
|
|
|
PH0063.1_Hoxb8/Jaspar
| Match Rank: | 3 |
| Score: | 0.72
| | Offset: | -4
| | Orientation: | reverse strand |
| Alignment: | ----TGAATTGC----
TTTATTAATTGCNNGN |
|
|
|
PH0043.1_Hmx3/Jaspar
| Match Rank: | 4 |
| Score: | 0.71
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TGAATTGC----
ATTNNTTAATTGCTTGT |
|
|
|
PH0042.1_Hmx2/Jaspar
| Match Rank: | 5 |
| Score: | 0.70
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----TGAATTGC----
ATTCNTTAATTGCTTGT |
|
|
|
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 6 |
| Score: | 0.67
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TGAATTGC-
GTTAATGGCC |
|
|
|
PB0066.1_Sox17_1/Jaspar
| Match Rank: | 7 |
| Score: | 0.67
| | Offset: | -3
| | Orientation: | reverse strand |
| Alignment: | ---TGAATTGC----
NNATNAATTGTTTNN |
|
|
|
PB0178.1_Sox8_2/Jaspar
| Match Rank: | 8 |
| Score: | 0.67
| | Offset: | -7
| | Orientation: | reverse strand |
| Alignment: | -------TGAATTGC
NNTNTCATGAATGT- |
|
|
|
MA0063.1_Nkx2-5/Jaspar
| Match Rank: | 9 |
| Score: | 0.65
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | TGAATTGC
TTAATTG- |
|
|
|
MA0019.1_Ddit3::Cebpa/Jaspar
| Match Rank: | 10 |
| Score: | 0.63
| | Offset: | 0
| | Orientation: | reverse strand |
| Alignment: | TGAATTGC----
GGGATTGCATNN |
|
|
|
