Information for motif26


Reverse Opposite:

p-value:1e-5
log p-value:-1.281e+01
Information Content per bp:1.870
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif21.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets89.0 +/- 46.7bp
Average Position of motif in Background98.7 +/- 40.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0101.1_REL/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGGTCTTACK
GGGGATTTCC-

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGGTCTTACK--
-NNACTTACCTN

PH0162.1_Six2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GGGTCTTACK---
AATGGGGTATCACGTTT

PH0123.1_Obox3/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGTCTTACK--
TGAGGGGGATTAACTAT

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GGGTCTTACK----
------TACTNNNN

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGTCTTACK--
TTAAGGGGATTAACTAC

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGGTCTTACK
GGGGATTTCC-

PB0059.1_Six6_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGGTCTTACK---
AATAGGGTATCATATAT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGGTCTTACK
NGGGATTA--

PH0163.1_Six3/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GGGTCTTACK---
GATAGGGTATCACTAAT