Information for motif3


Reverse Opposite:

p-value:1e-41
log p-value:-9.528e+01
Information Content per bp:1.653
Number of Target Sequences with motif577.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif4742.6
Percentage of Background Sequences with motif10.19%
Average Position of motif in Targets98.4 +/- 52.8bp
Average Position of motif in Background101.0 +/- 57.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TCACACCTYY
KTTCACACCT--

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TCACACCTYY
TGACACCT--

PB0013.1_Eomes_1/Jaspar

Match Rank:3
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----TCACACCTYY--
NNTTTTCACACCTTNNN

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--TCACACCTYY
ATTAACACCT--

MA0009.1_T/Jaspar

Match Rank:5
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TCACACCTYY
TTCACACCTAG

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TCACACCTYY-
-NNCACCTGNN

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TCACACCTYY--
ATAAATGACACCTATCA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TCACACCTYY
CTGTCTGTCACCT--

MA0103.2_ZEB1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCACACCTYY
CCTCACCTG-

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TCACACCTYY----
NNTNCGCACCTGTNGAN