Information for motif13


Reverse Opposite:

p-value:1e-23
log p-value:-5.397e+01
Information Content per bp:1.748
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif16.95%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets90.3 +/- 55.0bp
Average Position of motif in Background60.6 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0145.1_Pou2f3/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----AWTAGCAT----
TNTAATTTGCATACNA

PH0144.1_Pou2f2/Jaspar

Match Rank:2
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----AWTAGCAT----
TNTAATTTGCATANNN

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AWTAGCAT--
ATTTGCATAA

MA0507.1_POU2F2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AWTAGCAT--
TTCATTTGCATAT

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AWTAGCAT--
ATTTGCATAT

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AWTAGCAT-------
ATTTGCATAACAATG

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AWTAGCAT
--CAGCC-

MA0132.1_Pdx1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AWTAGCAT
AATTAG---

MA0164.1_Nr2e3/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AWTAGCAT-
--AAGCTTG

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AWTAGCAT-------
ATTTGCATAACAAAG