Information for motif18


Reverse Opposite:

p-value:1e-20
log p-value:-4.760e+01
Information Content per bp:1.647
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif12.43%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets91.0 +/- 64.2bp
Average Position of motif in Background42.8 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0471.1_E2F6/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:RGCAGGGAAG-
GGGCGGGAAGG

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---RGCAGGGAAG
CACAGCAGGGGG-

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:RGCAGGGAAG---
--AAGGCAAGTGT

MA0597.1_THAP1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RGCAGGGAAG
-TNNGGGCAG

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:RGCAGGGAAG
NACAGGAAAT

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:RGCAGGGAAG-
-----NGAAGC

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RGCAGGGAAG---
--CAGGTAAGTAT

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RGCAGGGAAG
NACAGGAAAT

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------RGCAGGGAAG
CCACACAGCAGGAGA-

MA0598.1_EHF/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RGCAGGGAAG
--CAGGAAGG