Information for motif19


Reverse Opposite:

p-value:1e-19
log p-value:-4.590e+01
Information Content per bp:1.689
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif15.25%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif1.90%
Average Position of motif in Targets108.2 +/- 54.5bp
Average Position of motif in Background142.5 +/- 45.6bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0516.1_SP2/Jaspar

Match Rank:1
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------GGCGRGCCTT
GGGNGGGGGCGGGGC--

POL003.1_GC-box/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GGCGRGCCTT
AGGGGGCGGGGCTG

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GGCGRGCCTT-
NAGANTGGCGGGGNGNA

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GGCGRGCCTT
ATTTTNGGGGGGCNN-

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGCGRGCCTT
ATAAGGGCGCGCGAT

MA0079.3_SP1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGCGRGCCTT
GGGGGCGGGGC--

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGCGRGCCTT
DGGGYGKGGC--

MA0056.1_MZF1_1-4/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGCGRGCCTT
TGGGGA-----

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGCGRGCCTT---
NTCGCGCGCCTTNNN

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCGRGCCTT
GGCGCGCT--