Information for motif2


Reverse Opposite:

p-value:1e-41
log p-value:-9.520e+01
Information Content per bp:1.739
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif20.34%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets103.0 +/- 40.2bp
Average Position of motif in Background54.4 +/- 7.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0153.1_HNF1B/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AAGSDTTAAC
TTAATATTTAAC

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AAGSDTTAAC-
TTAATGTTTAACC

MA0046.1_HNF1A/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---AAGSDTTAAC-
GNTAATNATTAACC

PB0109.1_Bbx_2/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AAGSDTTAAC------
TGATTGTTAACAGTTGG

PB0081.1_Tcf1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGSDTTAAC------
ACTTAGTTAACTAAAAA

PB0046.1_Mybl1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AAGSDTTAAC--
TTGAAAACCGTTAATTT

PH0168.1_Hnf1b/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGSDTTAAC-------
AGCTGTTAACTAGCCGT

MA0030.1_FOXF2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAGSDTTAAC---
CAAACGTAAACAAT

PB0045.1_Myb_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AAGSDTTAAC--
ATGGAAACCGTTATTTT

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAGSDTTAAC---
TTAGAGGGATTAACAAT