Information for motif20


Reverse Opposite:

p-value:1e-19
log p-value:-4.590e+01
Information Content per bp:1.838
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif15.25%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif1.72%
Average Position of motif in Targets96.4 +/- 51.7bp
Average Position of motif in Background81.6 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GRTRAGYA-
CAGGTAAGTAT

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GRTRAGYA
NAGATAAGNN

MA0035.3_Gata1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GRTRAGYA
ANAGATAAGAA

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GRTRAGYA
CAGATAAGGN

PB0023.1_Gata6_1/Jaspar

Match Rank:5
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------GRTRAGYA---
TATAGAGATAAGAATTG

MA0036.2_GATA2/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GRTRAGYA---
NCAGATAAGAANNN

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:7
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GRTRAGYA
NBWGATAAGR-

MA0124.1_NKX3-1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GRTRAGYA-
--TAAGTAT

PB0022.1_Gata5_1/Jaspar

Match Rank:9
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------GRTRAGYA---
TAAACTGATAAGAAGAT

MA0482.1_Gata4/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GRTRAGYA
NNGAGATAAGA-