Information for motif21


Reverse Opposite:

p-value:1e-19
log p-value:-4.453e+01
Information Content per bp:1.621
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif11.86%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets86.2 +/- 52.9bp
Average Position of motif in Background153.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTCAGGCTAGGG
ATTGCCTGAGGCAAT--

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGCTAGGG
SCCTSAGGSCAW--

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTCAGGCTAGGG
GCCTCAGGGCAT--

MA0524.1_TFAP2C/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTCAGGCTAGGG
CATGGCCCCAGGGCA---

MA0003.2_TFAP2A/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTCAGGCTAGGG
TGCCCTGAGGCANTN-

MA0146.2_Zfx/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTCAGGCTAGGG----
--CAGGCCNNGGCCNN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTCAGGCTAGGG-
--AAGGCAAGTGT

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CTCAGGCTAGGG
ATTGCCTGAGGCGAA--

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CTCAGGCTAGGG
ANTGCCTGAGGCAAN--

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CTCAGGCTAGGG
ATTCCCTGAGGGGAA--