Information for motif25


Reverse Opposite:

p-value:1e-18
log p-value:-4.152e+01
Information Content per bp:1.816
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif11.30%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets90.5 +/- 52.9bp
Average Position of motif in Background111.7 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTACTTGC---
NNACTTGCCTT

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------GTACTTGC---
TTCNAAGTACTTNNNNN

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTACTTGC
GGGTACGTGC

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GTACTTGC-
-TACTNNNN

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTACTTGC-
-TACGTGCV

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------GTACTTGC--
NATTTAAGTACTTANNA

MA0124.1_NKX3-1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTACTTGC
ATACTTA-

PH0112.1_Nkx2-3/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GTACTTGC--
CTTTAAGTACTTAATG

PH0061.1_Hoxb6/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GTACTTGC-----
NNNGTAATTACNNATA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTACTTGC
GGACGTGC