Information for motif27


Reverse Opposite:

p-value:1e-16
log p-value:-3.856e+01
Information Content per bp:1.646
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif10.73%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets80.1 +/- 55.8bp
Average Position of motif in Background134.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ATGAGCGC--
CTTGAGTGGCT

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ATGAGCGC
CATGAC---

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATGAGCGC--
TTGAGTGSTT

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATGAGCGC------
NNNNTGAGCACTGTNNG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATGAGCGC--
TTAAGTGCTT

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATGAGCGC-----
TGTCGTGACCCCTTAAT

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATGAGCGC-----
NNNNTTGACCCCTNNNN

POL002.1_INR/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATGAGCGC
NNNANTGA----

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGAGCGC-
CTYRAGTGSY

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATGAGCGC-
TTAAGTGGA