Information for motif34


Reverse Opposite:

p-value:1e-13
log p-value:-3.105e+01
Information Content per bp:1.648
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif15.82%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif2.69%
Average Position of motif in Targets103.8 +/- 58.5bp
Average Position of motif in Background123.6 +/- 37.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0154.2_EBF1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CHCTCTTGTGTY
-TCCCTGGGGAN

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------CHCTCTTGTGTY
CNNBRGCGCCCCCTGSTGGC

MA0139.1_CTCF/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CHCTCTTGTGTY--
TAGCGCCCCCTGGTGGCCA

MA0103.2_ZEB1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CHCTCTTGTGTY
CCTCACCTG----

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CHCTCTTGTGTY--
ANAGTGCCACCTGGTGGCCA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CHCTCTTGTGTY
AGCCACTCAAG----

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CHCTCTTGTGTY-
-TCCCNNGGGACN

MA0058.2_MAX/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CHCTCTTGTGTY-
---CCATGTGCTT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CHCTCTTGTGTY
AASCACTCAA-----

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CHCTCTTGTGTY
CCCCCTGCTGTG--