Information for motif39


Reverse Opposite:

p-value:1e-11
log p-value:-2.739e+01
Information Content per bp:1.800
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif12.99%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets76.8 +/- 54.0bp
Average Position of motif in Background79.0 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0109.1_Hltf/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCCTTGGCGG
AACCTTATAT-

PB0164.1_Smad3_2/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTGGCGG------
NAGANTGGCGGGGNGNA

MA0154.2_EBF1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCCTTGGCGG-
TCCCTGGGGAN

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TCCTTGGCGG
---TTGGCA-

PH0032.1_Evx2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TCCTTGGCGG--
ANCGCTAATTAGCGGTN

PB0112.1_E2F2_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCCTTGGCGG------
NNNNTTGGCGCCGANNN

MA0124.1_NKX3-1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TCCTTGGCGG
ATACTTA----

PH0109.1_Nkx1-1/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TCCTTGGCGG--
TGCGCTAATTAGTGGGA

MA0136.1_ELF5/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TCCTTGGCGG
TACTTCCTT-----

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TCCTTGGCGG--
ACCCCTAATTAGCGGTG