Information for motif4


Reverse Opposite:

p-value:1e-38
log p-value:-8.957e+01
Information Content per bp:1.657
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif23.73%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif1.59%
Average Position of motif in Targets109.2 +/- 47.5bp
Average Position of motif in Background57.7 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTTTGVCM
CTGACCTTTG---

MA0484.1_HNF4G/Jaspar

Match Rank:2
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGVCM---
TGGACTTTGNNCTCN

MA0017.1_NR2F1/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:TGACCTTTGVCM--
TGACCTTTGAACCT

MA0512.1_Rxra/Jaspar

Match Rank:4
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TGACCTTTGVCM
NCTGACCTTTG---

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:TGACCTTTGVCM--
TGACCTTTGCCCCA

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGVCM--
TGACCTTTGCCCTA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:7
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGVCM---
TGACCTTTGCCCTAN

MA0114.2_HNF4A/Jaspar

Match Rank:8
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-TGACCTTTGVCM--
CTGGACTTTGGACTC

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----TGACCTTTGVCM
NNNGTGACCTTTGNNN

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGACCTTTGVCM----
TGGACTTTGNNCTNTG