Information for motif41


Reverse Opposite:

p-value:1e-9
log p-value:-2.211e+01
Information Content per bp:1.756
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif7.34%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets55.6 +/- 37.3bp
Average Position of motif in Background25.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CCACACGGTG
NWAACCACADNN--

MA0147.2_Myc/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCACACGGTG
AAGCACATGG--

MA0002.2_RUNX1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCACACGGTG
AAACCACAGAN--

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCACACGGTG
ATCCAC------

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCACACGGTG
AAACCACAGC---

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCACACGGTG
NAAACCACAG----

MA0058.2_MAX/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCACACGGTG
AAGCACATGG--

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCACACGGTG
AACAKATGGY-

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCACACGGTG
AAACCACANN---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCACACGGTG
CCAGACAG--