Information for motif42


Reverse Opposite:

p-value:1e-9
log p-value:-2.151e+01
Information Content per bp:1.662
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif11.30%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif1.99%
Average Position of motif in Targets87.1 +/- 60.5bp
Average Position of motif in Background71.3 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0522.1_Tcf3/Jaspar

Match Rank:1
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ARWGCTGCTCTG
-NTGCAGCTGTG

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----ARWGCTGCTCTG
CGAACAGTGCTCACTAT

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ARWGCTGCTCTG
--NGCTN-----

MA0521.1_Tcf12/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ARWGCTGCTCTG
AACAGCTGCAG--

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ARWGCTGCTCTG
AGCAGCTGCTNN-

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ARWGCTGCTCTG---
CNNNGCTACTGTANNN

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ARWGCTGCTCTG
ACAGCTGTTV--

MA0500.1_Myog/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ARWGCTGCTCTG
GACAGCTGCAG--

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-ARWGCTGCTCTG---
TNNTGCTACTGTNNNN

MA0499.1_Myod1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----ARWGCTGCTCTG
NGNGACAGCTGCN---