Information for motif44


Reverse Opposite:

p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.820
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif9.04%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets91.2 +/- 60.0bp
Average Position of motif in Background112.9 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----GGTACAAT-----
NNNNNGAACAATTGANN

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GGTACAAT-----
TCACGGAACAATAGGTG

PB0072.1_Sox5_1/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---GGTACAAT-----
TTTAGAACAATAAAAT

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--GGTACAAT------
AATGAACAATGGAATT

MA0078.1_Sox17/Jaspar

Match Rank:5
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GGTACAAT---
--GACAATGNN

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGTACAAT-----
TTAAGAACAATAAATT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGTACAAT--
RNAACAATGG

PB0065.1_Sox15_1/Jaspar

Match Rank:8
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GGTACAAT------
TAGTGAACAATAGATTT

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GGTACAAT
--AACAAT

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GGTACAAT--
-GAACAATGG