Information for motif45


Reverse Opposite:

p-value:1e-8
log p-value:-1.962e+01
Information Content per bp:1.691
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif6.78%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets96.9 +/- 42.0bp
Average Position of motif in Background55.9 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGTYKTGT------
NNNNTTGTGTGCTTNN

MA0133.1_BRCA1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGTYKTGT
-GTGTTGN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGTYKTGT---
-CCATTGTTNY

PB0141.1_Isgf3g_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGTYKTGT-----
NNGTANTGTTTTNC

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGTYKTGT-
---ATTGTT

MA0442.1_SOX10/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGTYKTGT
--CTTTGT

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGTYKTGT----
---ATTGTTTAN

MA0480.1_Foxo1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGTYKTGT-----
--TCCTGTTTACA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTYKTGT-
-CCWTTGTY

MA0514.1_Sox3/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGTYKTGT---
-CCTTTGTTTT