Information for motif5


Reverse Opposite:

p-value:1e-33
log p-value:-7.729e+01
Information Content per bp:1.787
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif17.51%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets79.6 +/- 50.4bp
Average Position of motif in Background163.8 +/- 3.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AGTAACCA-----
NNNGTAACTANGNNA

MA0031.1_FOXD1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGTAACCA-
-GTAAACAT

MA0593.1_FOXP2/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGTAACCA--
AAGTAAACAAA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGTAACCA---
NDGTAAACARRN

PB0158.1_Rfx3_2/Jaspar

Match Rank:5
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------AGTAACCA---------
NNTNGNNGTAACCAAGNNNNAGN

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGTAACCA
AAAGTAAACA

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGTAACCA
AAAGTAAACA

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGTAACCA-
-GTAAACAG

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGTAACCA--
TATGTAAACANG

MA0148.3_FOXA1/Jaspar

Match Rank:10
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AGTAACCA----
CAAAGTAAACANNNN