Information for motif7


Reverse Opposite:

p-value:1e-27
log p-value:-6.239e+01
Information Content per bp:1.760
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif18.64%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif1.85%
Average Position of motif in Targets98.5 +/- 53.1bp
Average Position of motif in Background116.3 +/- 48.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGCAA--
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGCAA--
AGAAGAACAAAGGACTA

MA0514.1_Sox3/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AACAAAGCAA
AAAACAAAGG--

MA0143.3_Sox2/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AACAAAGCAA
AACAAAGG--

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AACAAAGCAA
RACAAWGG--

PB0083.1_Tcf7_1/Jaspar

Match Rank:6
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGCAA--
TATAGATCAAAGGAAAA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----AACAAAGCAA--
NNNAGATCAAAGGANNN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AACAAAGCAA
GAACAATGGN-

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AACAAAGCAA--
TATAGATCAAAGGAAAA

MA0442.1_SOX10/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AACAAAGCAA
-ACAAAG---