Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 183)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 49062)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-11	-2.614e+01	0.0000	18.0	9.84%	549.5	1.12%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-9	-2.095e+01	0.0000	12.0	6.56%	275.2	0.56%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-8	-1.961e+01	0.0000	30.0	16.39%	2319.2	4.72%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-8	-1.912e+01	0.0000	18.0	9.84%	856.4	1.74%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-6	-1.468e+01	0.0000	73.0	39.89%	11444.3	23.29%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-5	-1.272e+01	0.0001	8.0	4.37%	231.0	0.47%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-9.800e+00	0.0019	6.0	3.28%	174.4	0.35%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-3	-9.008e+00	0.0038	15.0	8.20%	1300.8	2.65%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-8.850e+00	0.0039	55.0	30.05%	9195.9	18.71%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-8.823e+00	0.0039	10.0	5.46%	631.1	1.28%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-3	-8.764e+00	0.0039	46.0	25.14%	7239.3	14.73%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-3	-8.623e+00	0.0039	17.0	9.29%	1661.3	3.38%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-8.564e+00	0.0039	26.0	14.21%	3242.1	6.60%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-3	-8.454e+00	0.0039	5.0	2.73%	142.2	0.29%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-3	-8.280e+00	0.0042	27.0	14.75%	3491.2	7.11%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-8.118e+00	0.0046	12.0	6.56%	963.5	1.96%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-8.030e+00	0.0047	38.0	20.77%	5759.2	11.72%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-7.260e+00	0.0096	5.0	2.73%	185.9	0.38%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.208e+00	0.0096	23.0	12.57%	2970.3	6.04%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-3	-7.152e+00	0.0096	38.0	20.77%	6027.9	12.27%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-6.831e+00	0.0126	28.0	15.30%	4040.6	8.22%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-6.662e+00	0.0143	20.0	10.93%	2526.1	5.14%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-6.359e+00	0.0185	20.0	10.93%	2592.0	5.28%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-6.283e+00	0.0192	34.0	18.58%	5453.6	11.10%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-6.021e+00	0.0239	24.0	13.11%	3454.3	7.03%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-5.887e+00	0.0263	26.0	14.21%	3897.9	7.93%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-5.870e+00	0.0263	18.0	9.84%	2324.1	4.73%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-2	-5.851e+00	0.0263	11.0	6.01%	1094.5	2.23%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-5.771e+00	0.0264	21.0	11.48%	2924.6	5.95%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-5.504e+00	0.0334	25.0	13.66%	3804.5	7.74%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.488e+00	0.0334	19.0	10.38%	2604.6	5.30%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-2	-5.423e+00	0.0339	9.0	4.92%	836.1	1.70%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-5.200e+00	0.0411	13.0	7.10%	1544.2	3.14%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.080e+00	0.0450	29.0	15.85%	4788.5	9.75%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-4.997e+00	0.0475	5.0	2.73%	314.8	0.64%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-4.976e+00	0.0475	7.0	3.83%	588.9	1.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-4.918e+00	0.0486	9.0	4.92%	906.5	1.84%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-4.740e+00	0.0566	10.0	5.46%	1101.7	2.24%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-4.690e+00	0.0579	92.0	50.27%	20324.4	41.36%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.373e+00	0.0776	5.0	2.73%	367.4	0.75%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.362e+00	0.0776	5.0	2.73%	368.1	0.75%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.353e+00	0.0776	20.0	10.93%	3120.2	6.35%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-4.350e+00	0.0776	33.0	18.03%	5960.8	12.13%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-4.187e+00	0.0849	20.0	10.93%	3173.3	6.46%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.920e+00	0.1085	18.0	9.84%	2841.0	5.78%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.860e+00	0.1126	10.0	5.46%	1266.2	2.58%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.713e+00	0.1278	5.0	2.73%	436.7	0.89%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.685e+00	0.1286	82.0	44.81%	18413.6	37.47%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-1	-3.618e+00	0.1347	41.0	22.40%	8188.1	16.66%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.584e+00	0.1366	48.0	26.23%	9899.5	20.15%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.508e+00	0.1445	15.0	8.20%	2345.4	4.77%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.486e+00	0.1449	21.0	11.48%	3638.6	7.41%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.412e+00	0.1531	12.0	6.56%	1760.4	3.58%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-3.396e+00	0.1531	4.0	2.19%	323.3	0.66%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.293e+00	0.1662	4.0	2.19%	334.1	0.68%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-3.254e+00	0.1697	45.0	24.59%	9373.2	19.08%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.250e+00	0.1697	19.0	10.38%	3291.5	6.70%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.244e+00	0.1697	3.0	1.64%	199.3	0.41%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.231e+00	0.1697	40.0	21.86%	8173.9	16.63%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.197e+00	0.1697	7.0	3.83%	849.6	1.73%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.160e+00	0.1711	35.0	19.13%	7016.1	14.28%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.159e+00	0.1711	11.0	6.01%	1628.2	3.31%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.010e+00	0.1924	13.0	7.10%	2085.8	4.24%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.932e+00	0.2048	15.0	8.20%	2539.2	5.17%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.932e+00	0.2048	27.0	14.75%	5253.1	10.69%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.765e+00	0.2348	39.0	21.31%	8226.2	16.74%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.734e+00	0.2386	4.0	2.19%	403.8	0.82%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.666e+00	0.2516	22.0	12.02%	4227.2	8.60%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.627e+00	0.2578	27.0	14.75%	5420.9	11.03%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-2.619e+00	0.2578	9.0	4.92%	1373.9	2.80%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.593e+00	0.2592	7.0	3.83%	978.8	1.99%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.441e+00	0.2974	23.0	12.57%	4579.9	9.32%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.431e+00	0.2974	17.0	9.29%	3191.1	6.49%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.370e+00	0.3107	14.0	7.65%	2539.5	5.17%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.356e+00	0.3109	10.0	5.46%	1665.7	3.39%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.343e+00	0.3109	7.0	3.83%	1041.7	2.12%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.317e+00	0.3148	8.0	4.37%	1254.2	2.55%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.179e+00	0.3567	22.0	12.02%	4492.9	9.14%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.153e+00	0.3616	24.0	13.11%	4987.6	10.15%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.121e+00	0.3688	45.0	24.59%	10208.3	20.78%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.113e+00	0.3688	27.0	14.75%	5739.7	11.68%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.088e+00	0.3716	27.0	14.75%	5756.4	11.71%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.044e+00	0.3837	16.0	8.74%	3150.2	6.41%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.043e+00	0.3837	3.0	1.64%	334.7	0.68%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.006e+00	0.3893	7.0	3.83%	1138.2	2.32%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.006e+00	0.3893	30.0	16.39%	6551.2	13.33%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.962e+00	0.3975	10.0	5.46%	1811.6	3.69%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.903e+00	0.4170	7.0	3.83%	1171.4	2.38%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.843e+00	0.4377	4.0	2.19%	561.9	1.14%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.834e+00	0.4377	7.0	3.83%	1194.9	2.43%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.819e+00	0.4384	33.0	18.03%	7445.6	15.15%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.808e+00	0.4386	6.0	3.28%	986.4	2.01%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.806e+00	0.4386	27.0	14.75%	5960.7	12.13%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.677e+00	0.4894	20.0	10.93%	4330.0	8.81%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.670e+00	0.4894	69.0	37.70%	16870.0	34.33%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.668e+00	0.4894	5.0	2.73%	814.3	1.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.594e+00	0.5151	10.0	5.46%	1974.7	4.02%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.590e+00	0.5151	19.0	10.38%	4145.6	8.44%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.582e+00	0.5151	96.0	52.46%	24150.9	49.15%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.579e+00	0.5151	12.0	6.56%	2455.3	5.00%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.572e+00	0.5151	10.0	5.46%	1985.0	4.04%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.558e+00	0.5151	46.0	25.14%	11008.2	22.40%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.523e+00	0.5208	1.0	0.55%	66.1	0.13%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.510e+00	0.5225	4.0	2.19%	645.8	1.31%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.477e+00	0.5352	24.0	13.11%	5476.3	11.14%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.438e+00	0.5510	42.0	22.95%	10108.0	20.57%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.415e+00	0.5586	2.0	1.09%	253.4	0.52%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.411e+00	0.5586	3.0	1.64%	458.3	0.93%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.385e+00	0.5649	4.0	2.19%	682.3	1.39%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.384e+00	0.5649	13.0	7.10%	2812.4	5.72%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.345e+00	0.5774	10.0	5.46%	2105.7	4.29%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.311e+00	0.5923	12.0	6.56%	2614.8	5.32%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.300e+00	0.5933	23.0	12.57%	5378.9	10.95%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.294e+00	0.5933	8.0	4.37%	1650.8	3.36%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.252e+00	0.6119	14.0	7.65%	3150.9	6.41%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.249e+00	0.6119	11.0	6.01%	2407.5	4.90%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.230e+00	0.6145	26.0	14.21%	6211.9	12.64%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.222e+00	0.6145	4.0	2.19%	736.2	1.50%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.202e+00	0.6211	10.0	5.46%	2190.1	4.46%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.185e+00	0.6267	26.0	14.21%	6257.7	12.74%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.184e+00	0.6267	13.0	7.10%	2949.1	6.00%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.181e+00	0.6267	16.0	8.74%	3707.3	7.54%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.162e+00	0.6267	2.0	1.09%	304.2	0.62%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.154e+00	0.6267	11.0	6.01%	2470.1	5.03%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.145e+00	0.6267	27.0	14.75%	6558.6	13.35%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.125e+00	0.6341	7.0	3.83%	1497.4	3.05%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.101e+00	0.6440	9.0	4.92%	2006.4	4.08%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-1.046e+00	0.6749	7.0	3.83%	1541.6	3.14%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.044e+00	0.6749	19.0	10.38%	4597.7	9.36%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.038e+00	0.6749	11.0	6.01%	2553.3	5.20%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.036e+00	0.6749	7.0	3.83%	1547.6	3.15%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.034e+00	0.6749	4.0	2.19%	809.8	1.65%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.031e+00	0.6749	38.0	20.77%	9564.4	19.46%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.010e+00	0.6749	2.0	1.09%	342.7	0.70%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-9.817e-01	0.6827	18.0	9.84%	4401.4	8.96%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.521e-01	0.6981	3.0	1.64%	599.7	1.22%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-9.125e-01	0.7210	8.0	4.37%	1880.8	3.83%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.034e-01	0.7223	4.0	2.19%	868.1	1.77%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-8.975e-01	0.7223	12.0	6.56%	2925.3	5.95%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.853e-01	0.7250	11.0	6.01%	2676.1	5.45%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.497e-01	0.7459	8.0	4.37%	1926.1	3.92%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.109e-01	0.7700	23.0	12.57%	5910.9	12.03%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.992e-01	0.7736	6.0	3.28%	1442.3	2.94%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.768e-01	0.7857	54.0	29.51%	14218.4	28.94%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.426e-01	0.8073	14.0	7.65%	3606.4	7.34%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.417e-01	0.8073	25.0	13.66%	6538.8	13.31%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-7.222e-01	0.8128	9.0	4.92%	2296.1	4.67%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.998e-01	0.8256	2.0	1.09%	447.4	0.91%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.793e-01	0.8370	4.0	2.19%	993.2	2.02%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.716e-01	0.8379	4.0	2.19%	998.7	2.03%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e0	-6.494e-01	0.8510	1.0	0.55%	198.9	0.40%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.088e-01	0.8805	12.0	6.56%	3226.4	6.57%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.007e-01	0.8818	1.0	0.55%	213.3	0.43%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.936e-01	0.8823	7.0	3.83%	1878.6	3.82%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.659e-01	0.9012	9.0	4.92%	2457.9	5.00%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.496e-01	0.9102	9.0	4.92%	2476.2	5.04%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.144e-01	0.9368	1.0	0.55%	244.9	0.50%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-4.915e-01	0.9524	5.0	2.73%	1420.3	2.89%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.792e-01	0.9581	2.0	1.09%	561.4	1.14%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-4.768e-01	0.9581	29.0	15.85%	8094.8	16.47%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.715e-01	0.9581	2.0	1.09%	566.3	1.15%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.713e-01	0.9581	6.0	3.28%	1726.5	3.51%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.677e-01	0.9581	5.0	2.73%	1444.6	2.94%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.659e-01	0.9581	3.0	1.64%	866.7	1.76%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.257e-01	0.9741	3.0	1.64%	900.2	1.83%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.114e-01	0.9821	29.0	15.85%	8247.1	16.78%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.920e-01	0.9953	3.0	1.64%	931.4	1.90%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.856e-01	0.9958	27.0	14.75%	7759.4	15.79%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.839e-01	0.9958	4.0	2.19%	1241.8	2.53%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.817e-01	0.9958	7.0	3.83%	2128.7	4.33%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.770e-01	0.9958	1.0	0.55%	311.0	0.63%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.525e-01	1.0000	3.0	1.64%	971.8	1.98%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.517e-01	1.0000	9.0	4.92%	2757.2	5.61%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.510e-01	1.0000	5.0	2.73%	1581.3	3.22%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.455e-01	1.0000	6.0	3.28%	1887.3	3.84%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.338e-01	1.0000	1.0	0.55%	337.8	0.69%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.112e-01	1.0000	2.0	1.09%	695.7	1.42%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.062e-01	1.0000	55.0	30.05%	15714.7	31.98%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.001e-01	1.0000	25.0	13.66%	7437.3	15.14%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.911e-01	1.0000	6.0	3.28%	1974.2	4.02%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.741e-01	1.0000	11.0	6.01%	3498.3	7.12%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.688e-01	1.0000	2.0	1.09%	741.1	1.51%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.598e-01	1.0000	4.0	2.19%	1407.5	2.86%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-2.453e-01	1.0000	5.0	2.73%	1748.6	3.56%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.441e-01	1.0000	1.0	0.55%	409.1	0.83%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-2.340e-01	1.0000	1.0	0.55%	419.2	0.85%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.309e-01	1.0000	21.0	11.48%	6525.0	13.28%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-2.304e-01	1.0000	3.0	1.64%	1130.3	2.30%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.285e-01	1.0000	62.0	33.88%	17963.2	36.56%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.278e-01	1.0000	4.0	2.19%	1462.1	2.98%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.248e-01	1.0000	37.0	20.22%	11078.9	22.55%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.146e-01	1.0000	2.0	1.09%	812.8	1.65%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.022e-01	1.0000	14.0	7.65%	4585.9	9.33%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.947e-01	1.0000	5.0	2.73%	1853.7	3.77%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.806e-01	1.0000	25.0	13.66%	7876.1	16.03%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.688e-01	1.0000	4.0	2.19%	1586.0	3.23%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.644e-01	1.0000	48.0	26.23%	14457.2	29.42%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.581e-01	1.0000	5.0	2.73%	1946.9	3.96%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.519e-01	1.0000	2.0	1.09%	921.1	1.87%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.356e-01	1.0000	11.0	6.01%	3930.1	8.00%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.294e-01	1.0000	3.0	1.64%	1342.0	2.73%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.219e-01	1.0000	14.0	7.65%	4916.8	10.01%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.491e-02	1.0000	2.0	1.09%	1069.2	2.18%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-8.819e-02	1.0000	2.0	1.09%	1092.1	2.22%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.691e-02	1.0000	1.0	0.55%	663.0	1.35%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.664e-02	1.0000	4.0	2.19%	1853.9	3.77%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-8.462e-02	1.0000	27.0	14.75%	9054.5	18.43%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.137e-02	1.0000	3.0	1.64%	1555.6	3.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.975e-02	1.0000	1.0	0.55%	719.6	1.46%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.537e-02	1.0000	15.0	8.20%	5607.5	11.41%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.609e-02	1.0000	19.0	10.38%	7062.4	14.37%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.163e-02	1.0000	3.0	1.64%	1743.5	3.55%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.936e-02	1.0000	29.0	15.85%	10195.0	20.75%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.771e-02	1.0000	23.0	12.57%	8416.2	17.13%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.576e-02	1.0000	1.0	0.55%	891.6	1.81%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.916e-02	1.0000	1.0	0.55%	1053.7	2.14%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.466e-03	1.0000	2.0	1.09%	1935.8	3.94%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.381e-03	1.0000	4.0	2.19%	2860.7	5.82%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	143.6	0.29%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	64.0	0.13%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	0.000e+00	1.0000	0.0	0.00%	601.9	1.22%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	408.4	0.83%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	214.4	0.44%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	40.9	0.08%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	275.7	0.56%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	157.7	0.32%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	0.000e+00	1.0000	0.0	0.00%	509.4	1.04%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	318.0	0.65%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	172.3	0.35%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	150.6	0.31%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	476.2	0.97%
NRF1/Promoter/Homer	STGCGCATGCGC	1e0	0.000e+00	1.0000	0.0	0.00%	613.8	1.25%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	379.1	0.77%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	63.7	0.13%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	379.1	0.77%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	0.000e+00	1.0000	0.0	0.00%	572.6	1.17%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	0.000e+00	1.0000	0.0	0.00%	442.7	0.90%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	38.1	0.08%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	56.3	0.11%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	173.1	0.35%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	436.4	0.89%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	158.8	0.32%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	44.7	0.09%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	28.7	0.06%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	0.0	0.00%	244.9	0.50%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	118.1	0.24%