Information for motif1


Reverse Opposite:

p-value:1e-1059
log p-value:-2.439e+03
Information Content per bp:1.894
Number of Target Sequences with motif2678.0
Percentage of Target Sequences with motif7.61%
Number of Background Sequences with motif287.1
Percentage of Background Sequences with motif1.39%
Average Position of motif in Targets98.0 +/- 48.6bp
Average Position of motif in Background92.4 +/- 96.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGGGGC-------
GCCASCAGGGGGCGCYVNNG

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGGGGC----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGGGGC-----
TGGCCACCAGGTGGCACTNT

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCACTAGGGGGC------
-NNNAAGGGGGCGGGNNN

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGGGGGC
CACCCCCGGGGGGG

PB0103.1_Zic3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGGGGC-
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGGGGC-
ACCCCCCCGGGGGGN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGGGGGC
CACAGCAGGGGG-

MA0116.1_Zfp423/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGGGGC
GCACCCCTGGGTGCC

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGGGGGC---
TGCGCATAGGGGAGGAG