Information for motif21


Reverse Opposite:

p-value:1e-130
log p-value:-3.000e+02
Information Content per bp:1.530
Number of Target Sequences with motif116.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets88.7 +/- 52.3bp
Average Position of motif in Background59.5 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCGGCACCCGGG
GGGCGGGACC----

PB0102.1_Zic2_1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCGGCACCCGGG-----
--CCCCCCCGGGGGGGT

PB0103.1_Zic3_1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCGGCACCCGGG-----
--CCCCCCCGGGGGGGT

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCGGCACCCGGG
GCCACACCCA--

MA0163.1_PLAG1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCGGCACCCGGG--
GGGGCCCAAGGGGG

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCGGCACCCGGG
--NNCACCTGNN

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCACCCGGG---
NNTNCGCACCTGTNGAN

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCGGCACCCGGG
GGCCACACCCAN-

MA0039.2_Klf4/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCGGCACCCGGG
GCCCCACCCA--

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCGGCACCCGGG
GCCMCRCCCH--