Information for motif23


Reverse Opposite:

p-value:1e-114
log p-value:-2.640e+02
Information Content per bp:1.530
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets114.7 +/- 56.0bp
Average Position of motif in Background129.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CGTTACGCGG-
NNGCNCTGCGCGGC

MA0043.1_HLF/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGTTACGCGG--
GGTTACGCAATA

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGTTACGCGG-----
NTNNTTAAGTGGNTNAN

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CGTTACGCGG-
---TACTNNNN

E2F(E2F)/Cell-Cycle-Exp/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGTTACGCGG---
-TTTTCGCGCGAA

PB0147.1_Max_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGTTACGCGG---
GTGCCACGCGACTG

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGTTACGCGG----
NNNNTGACCCGGCGCG

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CGTTACGCGG---
ANATTTTACGAGNNNN

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CGTTACGCGG
TACCCTAGTTACCGA-

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CGTTACGCGG-
CTGTTGCTAGGS