Information for motif5


Reverse Opposite:

p-value:1e-422
log p-value:-9.732e+02
Information Content per bp:1.779
Number of Target Sequences with motif1265.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif159.2
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets100.5 +/- 50.4bp
Average Position of motif in Background101.0 +/- 68.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:CTGATTGGCY
CCGATTGGCT

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CTGATTGGCY-----
CTGATTGGTCNATTT

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:CTGATTGGCY---
-TGATTGGCTANN

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------CTGATTGGCY--
AGAGTGCTGATTGGTCCA

MA0161.1_NFIC/Jaspar

Match Rank:5
Score:0.75
Offset:4
Orientation:forward strand
Alignment:CTGATTGGCY
----TTGGCA

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CTGATTGGCY--
NNNNGTTGATTGGGTCG

MA0038.1_Gfi1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTGATTGGCY
CNGTGATTTN--

PH0005.1_Barhl1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTGATTGGCY---
GNNTTAATTGGTTGTT

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTGATTGGCY--
ACTCCTAATTAGTCGT

PH0107.1_Msx2/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGATTGGCY---
ANCGCTAATTGGTCTNN