Information for motif6


Reverse Opposite:

p-value:1e-395
log p-value:-9.097e+02
Information Content per bp:1.813
Number of Target Sequences with motif268.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets98.5 +/- 54.9bp
Average Position of motif in Background140.3 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGCCGCWCGC--
GAGCACAGCAGGACA

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGCCGCWCGC--
--TBGCACGCAA

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGCCGCWCGC
GGCCCCGCCCCC

MA0039.2_Klf4/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGCCGCWCGC-
-GCCCCACCCA

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CGCCGCWCGC--
CCACACAGCAGGAGA

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGCCGCWCGC-
-GCCACACCCA

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGCCGCWCGC--
CCACACAGCAGGAGA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CGCCGCWCGC-
-----CACGCA

MA0599.1_KLF5/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGCCGCWCGC-
-GCCCCGCCCC

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGCCGCWCGC-
-GCCMCRCCCH