Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 35195)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 20626)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1069	-2.463e+03	0.0000	6050.0	17.19%	1305.6	6.33%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1057	-2.435e+03	0.0000	2667.0	7.58%	285.3	1.38%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-999	-2.301e+03	0.0000	5114.0	14.53%	1026.1	4.97%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-882	-2.032e+03	0.0000	4643.0	13.19%	944.1	4.57%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-764	-1.761e+03	0.0000	3276.0	9.31%	570.4	2.76%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-633	-1.458e+03	0.0000	5433.0	15.44%	1451.2	7.03%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-528	-1.218e+03	0.0000	3559.0	10.11%	828.9	4.02%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-489	-1.128e+03	0.0000	2336.0	6.64%	436.0	2.11%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-438	-1.010e+03	0.0000	9112.0	25.89%	3396.6	16.46%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-367	-8.457e+02	0.0000	6981.0	19.84%	2506.2	12.14%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-332	-7.660e+02	0.0000	3824.0	10.87%	1140.7	5.53%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-319	-7.361e+02	0.0000	7820.0	22.22%	3008.1	14.57%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-319	-7.358e+02	0.0000	895.0	2.54%	105.0	0.51%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-317	-7.320e+02	0.0000	3782.0	10.75%	1142.4	5.53%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-304	-7.010e+02	0.0000	861.0	2.45%	102.0	0.49%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-304	-7.001e+02	0.0000	3917.0	11.13%	1219.6	5.91%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-289	-6.664e+02	0.0000	5928.0	16.84%	2157.4	10.45%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-256	-5.908e+02	0.0000	2116.0	6.01%	540.4	2.62%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-249	-5.735e+02	0.0000	3526.0	10.02%	1131.7	5.48%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-238	-5.503e+02	0.0000	3154.0	8.96%	985.2	4.77%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-226	-5.209e+02	0.0000	2577.0	7.32%	759.7	3.68%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-223	-5.138e+02	0.0000	2363.0	6.71%	675.1	3.27%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-221	-5.110e+02	0.0000	4713.0	13.39%	1719.9	8.33%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-217	-5.018e+02	0.0000	3395.0	9.65%	1123.1	5.44%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-216	-4.979e+02	0.0000	2669.0	7.58%	811.7	3.93%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-203	-4.689e+02	0.0000	788.0	2.24%	124.9	0.60%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-200	-4.620e+02	0.0000	4454.0	12.66%	1641.5	7.95%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-198	-4.561e+02	0.0000	5517.0	15.68%	2158.5	10.46%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-183	-4.229e+02	0.0000	1246.0	3.54%	286.6	1.39%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-177	-4.081e+02	0.0000	3410.0	9.69%	1202.2	5.82%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-160	-3.700e+02	0.0000	4637.0	13.18%	1820.2	8.82%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-155	-3.590e+02	0.0000	1142.0	3.25%	273.7	1.33%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-151	-3.498e+02	0.0000	2732.0	7.76%	941.3	4.56%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-146	-3.378e+02	0.0000	9325.0	26.50%	4281.6	20.74%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-143	-3.306e+02	0.0000	6224.0	17.69%	2663.6	12.90%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-142	-3.290e+02	0.0000	3415.0	9.70%	1276.0	6.18%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-141	-3.263e+02	0.0000	4649.0	13.21%	1875.3	9.09%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-137	-3.156e+02	0.0000	1173.0	3.33%	303.1	1.47%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-133	-3.084e+02	0.0000	1714.0	4.87%	525.9	2.55%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e-129	-2.971e+02	0.0000	368.0	1.05%	44.8	0.22%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-127	-2.943e+02	0.0000	516.0	1.47%	84.9	0.41%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-126	-2.922e+02	0.0000	284.0	0.81%	26.4	0.13%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-126	-2.904e+02	0.0000	139.0	0.39%	4.2	0.02%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-124	-2.857e+02	0.0000	2250.0	6.39%	775.7	3.76%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-113	-2.603e+02	0.0000	6721.0	19.10%	3027.7	14.67%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-109	-2.524e+02	0.0000	1653.0	4.70%	536.4	2.60%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-108	-2.488e+02	0.0000	1034.0	2.94%	281.4	1.36%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-106	-2.463e+02	0.0000	158.0	0.45%	8.9	0.04%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-95	-2.190e+02	0.0000	2594.0	7.37%	996.1	4.83%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-93	-2.161e+02	0.0000	7074.0	20.10%	3292.8	15.95%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-84	-1.942e+02	0.0000	12944.0	36.78%	6579.9	31.88%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-78	-1.800e+02	0.0000	6415.0	18.23%	3010.0	14.58%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-77	-1.792e+02	0.0000	398.0	1.13%	77.6	0.38%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-74	-1.705e+02	0.0000	6474.0	18.40%	3061.2	14.83%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-72	-1.676e+02	0.0000	2857.0	8.12%	1185.0	5.74%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-72	-1.665e+02	0.0000	130.0	0.37%	9.9	0.05%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-69	-1.600e+02	0.0000	11868.0	33.72%	6063.2	29.37%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-65	-1.503e+02	0.0000	1120.0	3.18%	378.2	1.83%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-64	-1.480e+02	0.0000	690.0	1.96%	197.1	0.96%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-63	-1.463e+02	0.0000	391.0	1.11%	85.3	0.41%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-60	-1.382e+02	0.0000	414.0	1.18%	96.4	0.47%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-58	-1.348e+02	0.0000	12162.0	34.56%	6303.0	30.54%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-57	-1.335e+02	0.0000	1187.0	3.37%	422.6	2.05%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-57	-1.333e+02	0.0000	5731.0	16.28%	2742.1	13.28%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-56	-1.310e+02	0.0000	800.0	2.27%	253.1	1.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-56	-1.290e+02	0.0000	4135.0	11.75%	1902.1	9.22%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-53	-1.243e+02	0.0000	1048.0	2.98%	367.2	1.78%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-52	-1.199e+02	0.0000	2780.0	7.90%	1216.0	5.89%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-48	-1.126e+02	0.0000	4658.0	13.24%	2213.0	10.72%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-43	-1.003e+02	0.0000	2669.0	7.58%	1193.0	5.78%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-42	-9.748e+01	0.0000	3194.0	9.08%	1471.0	7.13%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-40	-9.401e+01	0.0000	1092.0	3.10%	417.0	2.02%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-39	-9.080e+01	0.0000	3252.0	9.24%	1514.2	7.34%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-39	-9.068e+01	0.0000	6483.0	18.42%	3261.9	15.80%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-39	-8.999e+01	0.0000	361.0	1.03%	97.2	0.47%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-38	-8.838e+01	0.0000	402.0	1.14%	114.9	0.56%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-38	-8.817e+01	0.0000	10780.0	30.63%	5676.8	27.50%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-38	-8.799e+01	0.0000	1882.0	5.35%	812.0	3.93%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-37	-8.714e+01	0.0000	10627.0	30.20%	5593.3	27.10%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-37	-8.614e+01	0.0000	4875.0	13.85%	2394.7	11.60%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-37	-8.565e+01	0.0000	1018.0	2.89%	390.6	1.89%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-36	-8.447e+01	0.0000	5170.0	14.69%	2559.9	12.40%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-36	-8.444e+01	0.0000	7099.0	20.17%	3621.6	17.55%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-34	-7.981e+01	0.0000	4257.0	12.10%	2076.7	10.06%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-34	-7.895e+01	0.0000	1115.0	3.17%	444.9	2.16%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-32	-7.472e+01	0.0000	1168.0	3.32%	475.7	2.30%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-32	-7.443e+01	0.0000	8703.0	24.73%	4553.4	22.06%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-31	-7.277e+01	0.0000	17868.0	50.77%	9832.2	47.63%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-31	-7.227e+01	0.0000	3030.0	8.61%	1437.9	6.97%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-31	-7.165e+01	0.0000	635.0	1.80%	226.7	1.10%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-30	-7.025e+01	0.0000	4636.0	13.17%	2308.9	11.19%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-28	-6.543e+01	0.0000	1587.0	4.51%	698.5	3.38%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-27	-6.359e+01	0.0000	392.0	1.11%	125.5	0.61%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-26	-6.095e+01	0.0000	2250.0	6.39%	1050.6	5.09%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-26	-6.042e+01	0.0000	426.0	1.21%	142.1	0.69%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-25	-5.983e+01	0.0000	2346.0	6.67%	1103.5	5.35%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-25	-5.918e+01	0.0000	1667.0	4.74%	750.5	3.64%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-24	-5.648e+01	0.0000	5869.0	16.68%	3033.9	14.70%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-24	-5.558e+01	0.0000	1156.0	3.28%	496.6	2.41%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-23	-5.296e+01	0.0000	1122.0	3.19%	483.2	2.34%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-22	-5.270e+01	0.0000	1647.0	4.68%	752.9	3.65%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-22	-5.268e+01	0.0000	236.0	0.67%	67.5	0.33%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-22	-5.084e+01	0.0000	3661.0	10.40%	1834.7	8.89%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-21	-5.000e+01	0.0000	5182.0	14.72%	2675.2	12.96%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-20	-4.763e+01	0.0000	1460.0	4.15%	665.8	3.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-20	-4.751e+01	0.0000	1810.0	5.14%	848.4	4.11%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-19	-4.566e+01	0.0000	2701.0	7.68%	1328.8	6.44%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-19	-4.534e+01	0.0000	5116.0	14.54%	2656.4	12.87%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-18	-4.253e+01	0.0000	946.0	2.69%	412.0	2.00%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-18	-4.235e+01	0.0000	1867.0	5.31%	890.6	4.31%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-18	-4.149e+01	0.0000	4160.0	11.82%	2140.2	10.37%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-17	-4.031e+01	0.0000	1154.0	3.28%	521.4	2.53%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-17	-3.915e+01	0.0000	134.0	0.38%	34.9	0.17%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-16	-3.790e+01	0.0000	205.0	0.58%	63.1	0.31%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-16	-3.723e+01	0.0000	165.0	0.47%	47.4	0.23%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-16	-3.722e+01	0.0000	458.0	1.30%	178.8	0.87%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-16	-3.720e+01	0.0000	611.0	1.74%	252.1	1.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-16	-3.713e+01	0.0000	3068.0	8.72%	1554.8	7.53%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-15	-3.652e+01	0.0000	1650.0	4.69%	789.9	3.83%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-15	-3.640e+01	0.0000	1354.0	3.85%	633.1	3.07%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-15	-3.628e+01	0.0000	5687.0	16.16%	3014.6	14.60%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-15	-3.523e+01	0.0000	752.0	2.14%	325.9	1.58%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-15	-3.469e+01	0.0000	3642.0	10.35%	1879.7	9.11%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-14	-3.426e+01	0.0000	635.0	1.80%	268.9	1.30%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-14	-3.412e+01	0.0000	898.0	2.55%	401.6	1.95%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-14	-3.295e+01	0.0000	4844.0	13.76%	2556.3	12.38%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-13	-3.064e+01	0.0000	6443.0	18.31%	3469.5	16.81%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-12	-2.887e+01	0.0000	3346.0	9.51%	1738.8	8.42%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-12	-2.883e+01	0.0000	3008.0	8.55%	1551.6	7.52%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-12	-2.881e+01	0.0000	4196.0	11.92%	2212.2	10.72%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-12	-2.869e+01	0.0000	3204.0	9.10%	1660.4	8.04%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-12	-2.837e+01	0.0000	201.0	0.57%	68.1	0.33%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-12	-2.807e+01	0.0000	9321.0	26.49%	5127.4	24.84%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-12	-2.777e+01	0.0000	680.0	1.93%	301.6	1.46%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-12	-2.769e+01	0.0000	533.0	1.51%	227.3	1.10%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-11	-2.708e+01	0.0000	1061.0	3.01%	500.3	2.42%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-11	-2.693e+01	0.0000	1567.0	4.45%	770.1	3.73%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-11	-2.617e+01	0.0000	364.0	1.03%	146.7	0.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-11	-2.592e+01	0.0000	595.0	1.69%	261.2	1.27%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-10	-2.511e+01	0.0000	326.0	0.93%	129.3	0.63%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-10	-2.386e+01	0.0000	2139.0	6.08%	1091.8	5.29%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-9	-2.299e+01	0.0000	279.0	0.79%	109.9	0.53%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-9	-2.259e+01	0.0000	725.0	2.06%	334.7	1.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-9	-2.243e+01	0.0000	145.0	0.41%	48.9	0.24%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-9	-2.216e+01	0.0000	2202.0	6.26%	1132.5	5.49%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-9	-2.148e+01	0.0000	2286.0	6.50%	1181.0	5.72%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-9	-2.093e+01	0.0000	1700.0	4.83%	861.4	4.17%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-8	-2.059e+01	0.0000	7045.0	20.02%	3873.3	18.76%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-1.956e+01	0.0000	160.0	0.45%	57.9	0.28%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-8	-1.853e+01	0.0000	4770.0	13.55%	2590.2	12.55%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-7	-1.784e+01	0.0000	3000.0	8.52%	1595.3	7.73%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-7	-1.782e+01	0.0000	2350.0	6.68%	1232.4	5.97%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-7	-1.759e+01	0.0000	787.0	2.24%	378.5	1.83%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-7	-1.682e+01	0.0000	1326.0	3.77%	671.5	3.25%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-7	-1.634e+01	0.0000	442.0	1.26%	200.1	0.97%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-6	-1.574e+01	0.0000	536.0	1.52%	250.8	1.22%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-6	-1.543e+01	0.0000	942.0	2.68%	467.1	2.26%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-6	-1.537e+01	0.0000	419.0	1.19%	190.9	0.92%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-6	-1.467e+01	0.0000	560.0	1.59%	265.6	1.29%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-6	-1.410e+01	0.0000	1872.0	5.32%	983.4	4.76%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-5	-1.303e+01	0.0000	230.0	0.65%	98.3	0.48%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-5	-1.303e+01	0.0000	230.0	0.65%	98.3	0.48%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-5	-1.269e+01	0.0000	1012.0	2.88%	514.1	2.49%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-5	-1.243e+01	0.0000	1118.0	3.18%	573.4	2.78%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.243e+01	0.0000	1619.0	4.60%	850.9	4.12%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-5	-1.241e+01	0.0000	54.0	0.15%	16.4	0.08%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-4	-9.836e+00	0.0001	1191.0	3.38%	624.7	3.03%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-4	-9.788e+00	0.0001	43.0	0.12%	13.9	0.07%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-4	-9.643e+00	0.0001	258.0	0.73%	118.2	0.57%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-4	-9.513e+00	0.0001	419.0	1.19%	203.6	0.99%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-3	-8.821e+00	0.0002	3189.0	9.06%	1758.1	8.52%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-3	-8.055e+00	0.0005	758.0	2.15%	392.3	1.90%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-3	-8.052e+00	0.0005	54.0	0.15%	19.5	0.09%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-3	-7.964e+00	0.0005	3902.0	11.09%	2173.7	10.53%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-3	-7.647e+00	0.0007	250.0	0.71%	118.1	0.57%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-7.598e+00	0.0007	944.0	2.68%	497.6	2.41%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.580e+00	0.0007	396.0	1.13%	196.5	0.95%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-7.065e+00	0.0012	1236.0	3.51%	664.0	3.22%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-6.698e+00	0.0017	1314.0	3.73%	709.8	3.44%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-6.657e+00	0.0018	8343.0	23.71%	4753.6	23.03%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-6.201e+00	0.0028	1595.0	4.53%	871.7	4.22%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.969e+00	0.0035	1770.0	5.03%	972.1	4.71%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-5.607e+00	0.0049	127.0	0.36%	58.2	0.28%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-5.503e+00	0.0054	360.0	1.02%	183.8	0.89%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-5.430e+00	0.0058	885.0	2.51%	475.5	2.30%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.426e+00	0.0058	476.0	1.35%	247.7	1.20%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-5.338e+00	0.0063	168.0	0.48%	80.9	0.39%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.086e+00	0.0081	1607.0	4.57%	886.9	4.30%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e-1	-4.562e+00	0.0136	14.0	0.04%	4.3	0.02%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.894e+00	0.0264	1306.0	3.71%	724.9	3.51%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-3.285e+00	0.0482	169.0	0.48%	86.4	0.42%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.736e+00	0.0831	24.0	0.07%	10.2	0.05%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.623e+00	0.0925	4832.0	13.73%	2779.9	13.47%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.418e+00	0.1130	1278.0	3.63%	722.2	3.50%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.314e+00	0.1247	1328.0	3.77%	752.1	3.64%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.241e+00	0.1335	1913.0	5.44%	1091.7	5.29%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.191e+00	0.1396	6069.0	17.25%	3509.4	17.00%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.189e+00	0.1396	281.0	0.80%	153.8	0.75%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.089e+00	0.1530	7848.0	22.30%	4550.6	22.05%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-1.919e+00	0.1805	1157.0	3.29%	658.7	3.19%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.856e+00	0.1912	1903.0	5.41%	1091.9	5.29%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.848e+00	0.1919	1444.0	4.10%	825.5	4.00%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.778e+00	0.2048	164.0	0.47%	89.8	0.44%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.555e+00	0.2548	1359.0	3.86%	780.7	3.78%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.426e+00	0.2883	297.0	0.84%	167.5	0.81%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.291e+00	0.3284	387.0	1.10%	220.3	1.07%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.268e+00	0.3343	6400.0	18.19%	3729.1	18.07%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.224e+00	0.3478	455.0	1.29%	260.1	1.26%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.006e+00	0.4304	1077.0	3.06%	625.3	3.03%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-9.099e-01	0.4716	131.0	0.37%	75.4	0.37%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-7.943e-01	0.5269	133.0	0.38%	77.4	0.37%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.775e-01	0.5333	362.0	1.03%	211.4	1.02%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.356e-01	0.5534	769.0	2.19%	450.2	2.18%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.364e-01	0.6083	5891.0	16.74%	3458.6	16.76%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.289e-01	0.6101	95.0	0.27%	56.3	0.27%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.011e-01	0.6243	76.0	0.22%	45.8	0.22%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.979e-01	0.6243	1227.0	3.49%	722.1	3.50%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.589e-01	0.6453	1419.0	4.03%	836.9	4.05%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.845e-01	0.7648	819.0	2.33%	488.7	2.37%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.215e-01	0.8960	411.0	1.17%	251.0	1.22%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.911e-01	0.9195	618.0	1.76%	376.6	1.82%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-1.688e-01	0.9360	673.0	1.91%	410.4	1.99%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.532e-02	1.0000	1143.0	3.25%	699.9	3.39%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.739e-02	1.0000	309.0	0.88%	197.9	0.96%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.863e-02	1.0000	1604.0	4.56%	985.5	4.77%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.508e-02	1.0000	5505.0	15.64%	3316.9	16.07%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.779e-03	1.0000	1987.0	5.65%	1229.1	5.95%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-6.667e-03	1.0000	1887.0	5.36%	1169.7	5.67%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.712e-03	1.0000	199.0	0.57%	140.4	0.68%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.989e-03	1.0000	2164.0	6.15%	1343.8	6.51%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.622e-03	1.0000	13020.0	37.00%	7785.4	37.72%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.117e-03	1.0000	1359.0	3.86%	859.2	4.16%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.832e-03	1.0000	557.0	1.58%	368.4	1.78%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.175e-03	1.0000	1213.0	3.45%	774.7	3.75%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.169e-03	1.0000	676.0	1.92%	444.8	2.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.070e-04	1.0000	6338.0	18.01%	3868.4	18.74%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.380e-04	1.0000	1453.0	4.13%	934.7	4.53%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.110e-04	1.0000	570.0	1.62%	388.5	1.88%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e0	-4.400e-05	1.0000	1829.0	5.20%	1171.9	5.68%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.000e-06	1.0000	554.0	1.57%	388.1	1.88%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.000e-06	1.0000	307.0	0.87%	230.6	1.12%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	912.0	2.59%	628.7	3.05%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-0.000e+00	1.0000	430.0	1.22%	334.0	1.62%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	383.0	1.09%	308.6	1.49%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-0.000e+00	1.0000	3797.0	10.79%	2474.3	11.99%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	0.000e+00	1.0000	5078.0	14.43%	3428.2	16.61%