Information for motif16


Reverse Opposite:

p-value:1e-48
log p-value:-1.123e+02
Information Content per bp:1.814
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets113.6 +/- 43.6bp
Average Position of motif in Background66.2 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.75
Offset:5
Orientation:forward strand
Alignment:CTGTGTAATTAG-
-----TAATTAGN

PH0022.1_Dlx3/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTGTGTAATTAG-----
NNNGGTAATTATNGNGN

PH0023.1_Dlx4/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTGTGTAATTAG-----
GTCGGTAATTATNGNGN

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:CTGTGTAATTAG--
----YTAATTAVHT

PH0072.1_Hoxc8/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTAATTAG---
TTGGGGTAATTAACGT

PH0061.1_Hoxb6/Jaspar

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTGTGTAATTAG---
TATTGGTAATTACCTT

PH0024.1_Dlx5/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGTGTAATTAG-----
-GGGGTAATTAGCTCTG

PH0039.1_Mnx1/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGTGTAATTAG-----
-GTACTAATTAGTGGCG

PH0160.1_Shox2/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGTGTAATTAG-----
CGCGTTAATTAATTGTG

PH0079.1_Hoxd3/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGTGTAATTAG-----
-ANGNTAATTANCNCAN