Information for motif17


Reverse Opposite:

p-value:1e-42
log p-value:-9.850e+01
Information Content per bp:1.902
Number of Target Sequences with motif1028.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif646.7
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets103.5 +/- 56.5bp
Average Position of motif in Background100.0 +/- 56.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0093.2_USF1/Jaspar

Match Rank:1
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAC-
GCCACGTGACC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:2
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGAC
ACCACGTGAC

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGAC-
TCACGTGACC

E-box(HLH)/Promoter/Homer

Match Rank:4
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGAC---
TCACGTGACCGG

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:CACGTGAC
CACGTGDC

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAC
KCCACGTGAC

MA0526.1_USF2/Jaspar

Match Rank:7
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAC-
GTCATGTGACC

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:CACGTGAC
CACGTGNC

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CACGTGAC-
KCACGTGMCN

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:10
Score:0.89
Offset:-8
Orientation:forward strand
Alignment:--------CACGTGAC------
GGAAGAGTCACGTGACCAATAC