Information for motif18


Reverse Opposite:

p-value:1e-35
log p-value:-8.248e+01
Information Content per bp:1.649
Number of Target Sequences with motif640.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif371.8
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets98.0 +/- 55.3bp
Average Position of motif in Background99.5 +/- 67.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0126.1_Obox6/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGCGGCTTT---
AAAAACGGATTATTG

PH0115.1_Nkx2-6/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AAGCGGCTTT
AATNTTAAGTGGNTNN

PH0113.1_Nkx2-4/Jaspar

Match Rank:3
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AAGCGGCTTT
AATTTCAAGTGGCTTN

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AAGCGGCTTT
AAATTCAAGTGGNTTN

MA0467.1_Crx/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGCGGCTTT-
AAGAGGATTAG

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AAGCGGCTTT
AANTTCAAGTGGCTTN

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AAGCGGCTTT--
NNNNATGCGGGTNNNN

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------AAGCGGCTTT-
NTNNTTAAGTGGNTNAN

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AAGCGGCTTT
----NGCTN-

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAGCGGCTTT-----
TGAACCGGATTAATGAA