Information for motif2


Reverse Opposite:

p-value:1e-953
log p-value:-2.195e+03
Information Content per bp:1.769
Number of Target Sequences with motif2565.0
Percentage of Target Sequences with motif7.25%
Number of Background Sequences with motif497.6
Percentage of Background Sequences with motif1.42%
Average Position of motif in Targets98.1 +/- 48.4bp
Average Position of motif in Background95.2 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGGGGGC-------
GCCASCAGGGGGCGCYVNNG

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGGGGGC----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGGGGGC-----
TGGCCACCAGGTGGCACTNT

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCACYAGGGGGC------
-NNNAAGGGGGCGGGNNN

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCACYAGGGGGC
CACCCCCGGGGGGG

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCACYAGGGGGC
CACAGCAGGGGG-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCACYAGGGGGC
--AACAGATGGC

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CCACYAGGGGGC
----CAGATGGC

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGGGGGC-
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGGGGGC-
ACCCCCCCGGGGGGN