Information for motif20


Reverse Opposite:

p-value:1e-26
log p-value:-6.041e+01
Information Content per bp:1.933
Number of Target Sequences with motif574.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif353.7
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets99.8 +/- 53.4bp
Average Position of motif in Background97.5 +/- 52.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----CATTGTGT---
NNNCCATTGTGTNAN

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--CATTGTGT
CTCATTGTC-

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CATTGTGT
CTTTGT--

MA0515.1_Sox6/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CATTGTGT-
CCATTGTTTT

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------CATTGTGT---
TGTTCCCATTGTGTACT

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATTGTGT------
CCATTGTATGCAAAT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATTGTGT-
CCATTGTTNY

MA0084.1_SRY/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CATTGTGT--
-ATTGTTTAN

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CATTGTGT-----
CNNNTATTGTTCNNNNN

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CATTGTGT
CCWTTGTY-