Information for motif21


Reverse Opposite:

p-value:1e-21
log p-value:-5.011e+01
Information Content per bp:1.705
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets92.5 +/- 57.2bp
Average Position of motif in Background88.2 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AAGAGCACGCAA
--TBGCACGCAA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:AAGAGCACGCAA
-----CACGCA-

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAGAGCACGCAA----
CGAAGCACACAAAATA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGAGCACGCAA-
--AGCCACTCAAG

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGAGCACGCAA-
ATAAAGGCGCGCGAT

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AAGAGCACGCAA--
TACATGTGCACATAAAA

MA0160.1_NR4A2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGAGCACGCAA
AAGGTCAC----

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------AAGAGCACGCAA-
NTNATGCAAYMNNHTGMAAY

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAGAGCACGCAA-
-GGACCACCCACG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AAGAGCACGCAA
--AAGCACTTAA