Information for motif22


Reverse Opposite:

p-value:1e-18
log p-value:-4.313e+01
Information Content per bp:1.705
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets108.7 +/- 51.3bp
Average Position of motif in Background115.7 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL007.1_BREd/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:AACCGGTTTGTT
-----GTTTGTT

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.62
Offset:6
Orientation:forward strand
Alignment:AACCGGTTTGTT
------ATTGTT

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AACCGGTTTGTT-----
TNNTCCTTTGTTCTNNT

PB0119.1_Foxa2_2/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AACCGGTTTGTT------
---NCNTTTGTTATTTNN

MA0084.1_SRY/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:AACCGGTTTGTT---
------ATTGTTTAN

PB0016.1_Foxj1_1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AACCGGTTTGTT------
--NNNNTTTGTTTACNNT

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:7
Score:0.57
Offset:-11
Orientation:reverse strand
Alignment:-----------AACCGGTTTGTT
VAAACYKGTHWAACMRGTTT---

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AACCGGTTTGTT-----
NNNTCCTTTGTTCTNNN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AACCGGTTTGTT--
----CCATTGTTNY

MA0514.1_Sox3/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AACCGGTTTGTT--
----CCTTTGTTTT