Information for motif3


Reverse Opposite:

p-value:1e-430
log p-value:-9.922e+02
Information Content per bp:1.683
Number of Target Sequences with motif9649.0
Percentage of Target Sequences with motif27.29%
Number of Background Sequences with motif6225.0
Percentage of Background Sequences with motif17.72%
Average Position of motif in Targets100.1 +/- 53.5bp
Average Position of motif in Background94.4 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GGGGGMGGGGCY-
AGGGGGCGGGGCTG

MA0079.3_SP1/Jaspar

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GGGGGMGGGGCY
GGGGGCGGGGC-

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GGGGGMGGGGCY
GGGGGCGGGGCC

MA0599.1_KLF5/Jaspar

Match Rank:4
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:GGGGGMGGGGCY
-GGGGNGGGGC-

MA0516.1_SP2/Jaspar

Match Rank:5
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----GGGGGMGGGGCY
GGGNGGGGGCGGGGC-

PB0039.1_Klf7_1/Jaspar

Match Rank:6
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--GGGGGMGGGGCY--
NNAGGGGCGGGGTNNA

MA0039.2_Klf4/Jaspar

Match Rank:7
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GGGGGMGGGGCY
-TGGGTGGGGC-

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GGGGGMGGGGCY
-DGGGYGKGGC-

MA0162.2_EGR1/Jaspar

Match Rank:9
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---GGGGGMGGGGCY
GGCGGGGGCGGGGG-

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.82
Offset:2
Orientation:forward strand
Alignment:GGGGGMGGGGCY
--GGGGGGGG--