Information for motif5


Reverse Opposite:

p-value:1e-303
log p-value:-6.989e+02
Information Content per bp:1.616
Number of Target Sequences with motif7948.0
Percentage of Target Sequences with motif22.48%
Number of Background Sequences with motif5262.4
Percentage of Background Sequences with motif14.98%
Average Position of motif in Targets99.7 +/- 53.8bp
Average Position of motif in Background95.8 +/- 59.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:CTGATTRGCY
CCGATTGGCT

MA0502.1_NFYB/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CTGATTRGCY-----
CTGATTGGTCNATTT

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:CTGATTRGCY---
-TGATTGGCTANN

MA0060.2_NFYA/Jaspar

Match Rank:4
Score:0.82
Offset:-6
Orientation:forward strand
Alignment:------CTGATTRGCY--
AGAGTGCTGATTGGTCCA

PH0098.1_Lhx8/Jaspar

Match Rank:5
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CTGATTRGCY---
ACCCCTAATTAGCGGTG

PH0097.1_Lhx6_2/Jaspar

Match Rank:6
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CTGATTRGCY---
TCCACTAATTAGCGGTT

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CTGATTRGCY--
ACNNCTAATTAGNNNN

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:8
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CTGATTRGCY
-TAATTAGN-

PH0034.1_Gbx2/Jaspar

Match Rank:9
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CTGATTRGCY--
AANCGCTAATTAGCNNN

PH0127.1_Nobox/Jaspar

Match Rank:10
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----CTGATTRGCY--
GNTNNCTAATTAGNNCG